Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.34■□□□□ 0.37
CHRNA4P43681 AL121761.2-201ENST00000598007 1648 ntBASIC17.34■□□□□ 0.37
CHRNA4P43681 AL353135.1-201ENST00000606729 504 ntBASIC17.34■□□□□ 0.37
CHRNA4P43681 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.34■□□□□ 0.37
CHRNA4P43681 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CHRNA4P43681 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA4P43681 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA4P43681 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA4P43681 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.34■□□□□ 0.37
CHRNA4P43681 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA4P43681 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA4P43681 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.33■□□□□ 0.37
CHRNA4P43681 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.33■□□□□ 0.37
CHRNA4P43681 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA4P43681 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CHRNA4P43681 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.33■□□□□ 0.36
CHRNA4P43681 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA4P43681 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.33■□□□□ 0.36
CHRNA4P43681 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA4P43681 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.33■□□□□ 0.36
CHRNA4P43681 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA4P43681 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA4P43681 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
CHRNA4P43681 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA4P43681 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.32■□□□□ 0.36
CHRNA4P43681 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.32■□□□□ 0.36
CHRNA4P43681 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 NCF1C-201ENST00000438382 1427 ntBASIC17.32■□□□□ 0.36
CHRNA4P43681 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.32■□□□□ 0.36
CHRNA4P43681 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CHRNA4P43681 AL590787.1-201ENST00000568856 1315 ntBASIC17.32■□□□□ 0.36
CHRNA4P43681 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.32■□□□□ 0.36
CHRNA4P43681 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.32■□□□□ 0.36
CHRNA4P43681 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.32■□□□□ 0.36
CHRNA4P43681 SCARNA2-201ENST00000458748 420 ntBASIC17.32■□□□□ 0.36
CHRNA4P43681 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.32■□□□□ 0.36
CHRNA4P43681 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 KRT126P-201ENST00000549467 1181 ntBASIC17.32■□□□□ 0.36
CHRNA4P43681 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.32■□□□□ 0.36
CHRNA4P43681 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHRNA4P43681 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CHRNA4P43681 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CHRNA4P43681 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHRNA4P43681 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.32■□□□□ 0.36
CHRNA4P43681 AC105020.1-201ENST00000435356 2205 ntBASIC17.32■□□□□ 0.36
CHRNA4P43681 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA4P43681 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA4P43681 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA4P43681 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA4P43681 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA4P43681 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA4P43681 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHRNA4P43681 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
CHRNA4P43681 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHRNA4P43681 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHRNA4P43681 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHRNA4P43681 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CHRNA4P43681 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA4P43681 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.31■□□□□ 0.36
CHRNA4P43681 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.31■□□□□ 0.36
CHRNA4P43681 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms