Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PTPN9P43378 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN9P43378 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PTPN9P43378 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
PTPN9P43378 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN9P43378 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN9P43378 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN9P43378 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
PTPN9P43378 AC148477.8-201ENST00000624298 468 ntBASIC17.84■□□□□ 0.45
PTPN9P43378 AF228730.7-201ENST00000641842 219 ntBASIC17.84■□□□□ 0.45
PTPN9P43378 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.84■□□□□ 0.45
PTPN9P43378 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTPN9P43378 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.84■□□□□ 0.45
PTPN9P43378 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
PTPN9P43378 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
PTPN9P43378 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTPN9P43378 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTPN9P43378 OR6D1P-202ENST00000641007 5290 ntBASIC17.83■□□□□ 0.45
PTPN9P43378 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PTPN9P43378 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
PTPN9P43378 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTPN9P43378 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTPN9P43378 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
PTPN9P43378 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTPN9P43378 TUBB8P12-201ENST00000308911 1335 ntBASIC17.83■□□□□ 0.44
PTPN9P43378 TUBB7P-202ENST00000428444 1305 ntBASIC17.83■□□□□ 0.44
PTPN9P43378 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.83■□□□□ 0.44
PTPN9P43378 TUBB8P7-204ENST00000567960 1332 ntBASIC17.83■□□□□ 0.44
PTPN9P43378 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.83■□□□□ 0.44
PTPN9P43378 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.83■□□□□ 0.44
PTPN9P43378 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.83■□□□□ 0.44
PTPN9P43378 TPM4P1-201ENST00000436100 807 ntBASIC17.83■□□□□ 0.44
PTPN9P43378 AC136632.2-201ENST00000512891 861 ntBASIC17.83■□□□□ 0.44
PTPN9P43378 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.83■□□□□ 0.44
PTPN9P43378 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
PTPN9P43378 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.83■□□□□ 0.44
PTPN9P43378 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.83■□□□□ 0.44
PTPN9P43378 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.83■□□□□ 0.44
PTPN9P43378 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
PTPN9P43378 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.83■□□□□ 0.44
PTPN9P43378 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 AC105020.1-201ENST00000435356 2205 ntBASIC17.83■□□□□ 0.44
PTPN9P43378 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
PTPN9P43378 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.83■□□□□ 0.44
PTPN9P43378 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTPN9P43378 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.82■□□□□ 0.44
PTPN9P43378 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.82■□□□□ 0.44
PTPN9P43378 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 RPS2P28-201ENST00000314255 741 ntBASIC17.82■□□□□ 0.44
PTPN9P43378 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.82■□□□□ 0.44
PTPN9P43378 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.82■□□□□ 0.44
PTPN9P43378 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
PTPN9P43378 AC105339.3-201ENST00000560043 636 ntBASIC17.82■□□□□ 0.44
PTPN9P43378 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 AL773604.1-201ENST00000617417 272 ntBASIC17.82■□□□□ 0.44
PTPN9P43378 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.82■□□□□ 0.44
PTPN9P43378 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTPN9P43378 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PTPN9P43378 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PTPN9P43378 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
PTPN9P43378 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PTPN9P43378 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PTPN9P43378 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN9P43378 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms