Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VTNP04004 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VTNP04004 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.76■□□□□ 0.59
VTNP04004 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.76■□□□□ 0.59
VTNP04004 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.76■□□□□ 0.59
VTNP04004 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.76■□□□□ 0.59
VTNP04004 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.76■□□□□ 0.59
VTNP04004 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.76■□□□□ 0.59
VTNP04004 AC027796.2-201ENST00000575326 344 ntBASIC18.76■□□□□ 0.59
VTNP04004 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.76■□□□□ 0.59
VTNP04004 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VTNP04004 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VTNP04004 AC093525.9-201ENST00000624961 1746 ntBASIC18.76■□□□□ 0.59
VTNP04004 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VTNP04004 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VTNP04004 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VTNP04004 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.75■□□□□ 0.59
VTNP04004 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
VTNP04004 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.75■□□□□ 0.59
VTNP04004 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
VTNP04004 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 ACTG1P14-201ENST00000446382 1122 ntBASIC18.75■□□□□ 0.59
VTNP04004 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.75■□□□□ 0.59
VTNP04004 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.75■□□□□ 0.59
VTNP04004 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.75■□□□□ 0.59
VTNP04004 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VTNP04004 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.75■□□□□ 0.59
VTNP04004 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.75■□□□□ 0.59
VTNP04004 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VTNP04004 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.75■□□□□ 0.59
VTNP04004 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VTNP04004 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VTNP04004 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
VTNP04004 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 NOC2LP2-201ENST00000407594 1944 ntBASIC18.74■□□□□ 0.59
VTNP04004 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.74■□□□□ 0.59
VTNP04004 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
VTNP04004 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VTNP04004 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.74■□□□□ 0.59
VTNP04004 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.74■□□□□ 0.59
VTNP04004 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.74■□□□□ 0.59
VTNP04004 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.74■□□□□ 0.59
VTNP04004 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.74■□□□□ 0.59
VTNP04004 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VTNP04004 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VTNP04004 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.74■□□□□ 0.59
VTNP04004 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VTNP04004 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VTNP04004 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
VTNP04004 AC016396.2-201ENST00000562575 1417 ntBASIC18.74■□□□□ 0.59
VTNP04004 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
VTNP04004 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.73■□□□□ 0.59
VTNP04004 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VTNP04004 AL138688.1-201ENST00000624851 1594 ntBASIC18.73■□□□□ 0.59
VTNP04004 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.73■□□□□ 0.59
VTNP04004 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
VTNP04004 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
VTNP04004 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.73■□□□□ 0.59
VTNP04004 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.73■□□□□ 0.59
VTNP04004 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VTNP04004 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.73■□□□□ 0.59
VTNP04004 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
VTNP04004 AC027612.4-201ENST00000605371 583 ntBASIC18.73■□□□□ 0.59
VTNP04004 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.73■□□□□ 0.59
VTNP04004 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms