Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
TOP3BO95985 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TOP3BO95985 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.65■□□□□ 0.42
TOP3BO95985 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TOP3BO95985 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TOP3BO95985 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TOP3BO95985 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TOP3BO95985 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TOP3BO95985 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TOP3BO95985 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
TOP3BO95985 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TOP3BO95985 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
TOP3BO95985 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TOP3BO95985 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
TOP3BO95985 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 HTR5BP-201ENST00000430851 1154 ntBASIC17.64■□□□□ 0.41
TOP3BO95985 AL591424.1-201ENST00000442569 1213 ntBASIC17.64■□□□□ 0.41
TOP3BO95985 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.64■□□□□ 0.41
TOP3BO95985 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.64■□□□□ 0.41
TOP3BO95985 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 AC021087.4-201ENST00000563761 564 ntBASIC17.64■□□□□ 0.41
TOP3BO95985 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.64■□□□□ 0.41
TOP3BO95985 Z83851.2-201ENST00000609564 659 ntBASIC17.64■□□□□ 0.41
TOP3BO95985 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.64■□□□□ 0.41
TOP3BO95985 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TOP3BO95985 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TOP3BO95985 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TOP3BO95985 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.64■□□□□ 0.41
TOP3BO95985 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TOP3BO95985 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TOP3BO95985 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.63■□□□□ 0.41
TOP3BO95985 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 AC023274.1-201ENST00000418278 595 ntBASIC17.63■□□□□ 0.41
TOP3BO95985 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 AC040169.1-201ENST00000565382 521 ntBASIC17.63■□□□□ 0.41
TOP3BO95985 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.63■□□□□ 0.41
TOP3BO95985 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 AC060834.1-201ENST00000443027 2032 ntBASIC17.63■□□□□ 0.41
TOP3BO95985 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TOP3BO95985 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
TOP3BO95985 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
TOP3BO95985 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms