Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 FTH1-202ENST00000526640 786 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
USH2AO75445 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC7.56□□□□□ -1.2
USH2AO75445 SLC25A47P1-201ENST00000531577 414 ntBASIC7.56□□□□□ -1.2
USH2AO75445 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 MIR5572-201ENST00000583188 137 ntBASIC7.56□□□□□ -1.2
USH2AO75445 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC7.56□□□□□ -1.2
USH2AO75445 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 BID-204ENST00000399767 2129 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 FAM86HP-204ENST00000513466 959 ntBASIC7.56□□□□□ -1.2
USH2AO75445 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC7.56□□□□□ -1.2
USH2AO75445 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC7.56□□□□□ -1.2
USH2AO75445 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
USH2AO75445 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC7.56□□□□□ -1.2
USH2AO75445 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC7.56□□□□□ -1.2
USH2AO75445 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
USH2AO75445 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
USH2AO75445 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC7.55□□□□□ -1.2
USH2AO75445 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC7.55□□□□□ -1.2
USH2AO75445 PTGES2-AS1-201ENST00000443493 2100 ntBASIC7.55□□□□□ -1.2
USH2AO75445 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
USH2AO75445 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
USH2AO75445 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
USH2AO75445 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
USH2AO75445 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 PC-208ENST00000529047 1607 ntTSL 3 BASIC7.55□□□□□ -1.2
USH2AO75445 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
USH2AO75445 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC7.55□□□□□ -1.2
USH2AO75445 NUS1P3-201ENST00000423502 862 ntBASIC7.55□□□□□ -1.2
USH2AO75445 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC7.55□□□□□ -1.2
USH2AO75445 FO681548.1-201ENST00000455617 1132 ntBASIC7.55□□□□□ -1.2
USH2AO75445 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC7.55□□□□□ -1.2
USH2AO75445 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC7.55□□□□□ -1.2
USH2AO75445 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC7.55□□□□□ -1.2
USH2AO75445 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
USH2AO75445 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms