Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4BO75351 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.9■□□□□ 0.3
VPS4BO75351 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 AF228730.7-201ENST00000641842 219 ntBASIC16.9■□□□□ 0.3
VPS4BO75351 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.9■□□□□ 0.3
VPS4BO75351 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS4BO75351 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
VPS4BO75351 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS4BO75351 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VPS4BO75351 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.89■□□□□ 0.3
VPS4BO75351 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS4BO75351 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS4BO75351 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
VPS4BO75351 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS4BO75351 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 KRT16P4-201ENST00000453883 522 ntBASIC16.89■□□□□ 0.29
VPS4BO75351 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.89■□□□□ 0.29
VPS4BO75351 AC092865.5-201ENST00000545435 363 ntBASIC16.89■□□□□ 0.29
VPS4BO75351 GPR32P1-201ENST00000601788 811 ntBASIC16.89■□□□□ 0.29
VPS4BO75351 AC099336.1-202ENST00000602961 463 ntBASIC16.89■□□□□ 0.29
VPS4BO75351 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS4BO75351 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS4BO75351 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
VPS4BO75351 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 AC046185.3-201ENST00000623228 1824 ntBASIC16.89■□□□□ 0.29
VPS4BO75351 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS4BO75351 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS4BO75351 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS4BO75351 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 AC105020.1-201ENST00000435356 2205 ntBASIC16.88■□□□□ 0.29
VPS4BO75351 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS4BO75351 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
VPS4BO75351 MIR1233-2-201ENST00000408138 82 ntBASIC16.88■□□□□ 0.29
VPS4BO75351 MIR1233-1-201ENST00000408722 82 ntBASIC16.88■□□□□ 0.29
VPS4BO75351 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS4BO75351 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 IGHV3-52-201ENST00000519770 353 ntBASIC16.88■□□□□ 0.29
VPS4BO75351 AP001005.1-201ENST00000571755 1248 ntBASIC16.88■□□□□ 0.29
VPS4BO75351 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS4BO75351 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
VPS4BO75351 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 Z83836.1-201ENST00000624605 1642 ntBASIC16.88■□□□□ 0.29
VPS4BO75351 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS4BO75351 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS4BO75351 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS4BO75351 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4BO75351 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4BO75351 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms