Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PRYP6-201ENST00000514804 343 ntBASIC23.83■■□□□ 1.4
NPHP4O75161 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC23.83■■□□□ 1.4
NPHP4O75161 USB1-203ENST00000539737 1212 ntTSL 2 BASIC23.83■■□□□ 1.4
NPHP4O75161 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC23.83■■□□□ 1.4
NPHP4O75161 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC23.83■■□□□ 1.4
NPHP4O75161 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC23.82■■□□□ 1.4
NPHP4O75161 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC23.82■■□□□ 1.4
NPHP4O75161 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC23.82■■□□□ 1.4
NPHP4O75161 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC23.82■■□□□ 1.4
NPHP4O75161 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC23.82■■□□□ 1.4
NPHP4O75161 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP4O75161 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC23.82■■□□□ 1.4
NPHP4O75161 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
NPHP4O75161 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP4O75161 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP4O75161 AC105021.1-202ENST00000570572 669 ntBASIC23.82■■□□□ 1.4
NPHP4O75161 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC23.82■■□□□ 1.4
NPHP4O75161 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP4O75161 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 KRT8P44-201ENST00000441609 1350 ntBASIC23.81■■□□□ 1.4
NPHP4O75161 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
NPHP4O75161 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP4O75161 BCYRN1-201ENST00000418539 200 ntBASIC23.81■■□□□ 1.4
NPHP4O75161 RN7SL618P-201ENST00000477850 296 ntBASIC23.81■■□□□ 1.4
NPHP4O75161 AC021097.1-201ENST00000607902 574 ntBASIC23.81■■□□□ 1.4
NPHP4O75161 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 HARS-204ENST00000438307 1789 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
NPHP4O75161 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP4O75161 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
NPHP4O75161 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
NPHP4O75161 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.8■■□□□ 1.4
NPHP4O75161 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
NPHP4O75161 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC23.8■■□□□ 1.4
NPHP4O75161 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 ELK1P1-201ENST00000485699 580 ntBASIC23.8■■□□□ 1.4
NPHP4O75161 KRT18P34-201ENST00000488218 1270 ntBASIC23.8■■□□□ 1.4
NPHP4O75161 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
NPHP4O75161 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 PFAS-212ENST00000625942 396 ntTSL 5 BASIC23.8■■□□□ 1.4
NPHP4O75161 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 CROCCP3-202ENST00000420820 1947 ntBASIC23.8■■□□□ 1.4
NPHP4O75161 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP4O75161 REXO1L9P-201ENST00000604264 2108 ntBASIC23.79■■□□□ 1.4
NPHP4O75161 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP4O75161 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP4O75161 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC23.79■■□□□ 1.4
NPHP4O75161 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP4O75161 AC114501.2-201ENST00000439631 535 ntBASIC23.79■■□□□ 1.4
NPHP4O75161 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP4O75161 CTBP2P3-201ENST00000585629 1255 ntBASIC23.79■■□□□ 1.4
NPHP4O75161 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP4O75161 GPR182-203ENST00000622922 591 ntBASIC23.79■■□□□ 1.4
NPHP4O75161 AP001350.2-201ENST00000625104 1094 ntBASIC23.79■■□□□ 1.4
NPHP4O75161 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
NPHP4O75161 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP4O75161 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP4O75161 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
NPHP4O75161 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP4O75161 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP4O75161 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP4O75161 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC23.78■■□□□ 1.4
NPHP4O75161 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPHP4O75161 HAUS4P1-201ENST00000406739 1145 ntBASIC23.78■■□□□ 1.4
NPHP4O75161 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP4O75161 MFF-223ENST00000524634 647 ntTSL 2 BASIC23.78■■□□□ 1.4
NPHP4O75161 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms