Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
PROM1O43490 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PROM1O43490 AC097637.2-201ENST00000624096 1997 ntBASIC16.35■□□□□ 0.21
PROM1O43490 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 ACTG1P4-201ENST00000425123 1122 ntBASIC16.35■□□□□ 0.21
PROM1O43490 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 FDX1P1-201ENST00000449115 551 ntBASIC16.35■□□□□ 0.21
PROM1O43490 BX005266.1-201ENST00000473402 457 ntBASIC16.35■□□□□ 0.21
PROM1O43490 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PROM1O43490 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.35■□□□□ 0.21
PROM1O43490 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.35■□□□□ 0.21
PROM1O43490 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.35■□□□□ 0.21
PROM1O43490 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.35■□□□□ 0.21
PROM1O43490 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
PROM1O43490 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PROM1O43490 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.35■□□□□ 0.21
PROM1O43490 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PROM1O43490 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.34■□□□□ 0.21
PROM1O43490 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
PROM1O43490 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 LINC02012-201ENST00000608206 1725 ntBASIC16.34■□□□□ 0.21
PROM1O43490 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
PROM1O43490 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.34■□□□□ 0.21
PROM1O43490 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.34■□□□□ 0.21
PROM1O43490 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 AL022326.1-202ENST00000641533 845 ntBASIC16.34■□□□□ 0.21
PROM1O43490 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.34■□□□□ 0.21
PROM1O43490 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PROM1O43490 AD000864.1-201ENST00000624076 2295 ntBASIC16.34■□□□□ 0.21
PROM1O43490 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.34■□□□□ 0.21
PROM1O43490 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.33■□□□□ 0.21
PROM1O43490 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PROM1O43490 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.33■□□□□ 0.2
PROM1O43490 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.33■□□□□ 0.2
PROM1O43490 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PROM1O43490 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.33■□□□□ 0.2
PROM1O43490 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
PROM1O43490 SCARNA2-201ENST00000458748 420 ntBASIC16.33■□□□□ 0.2
PROM1O43490 SART3-203ENST00000546611 1184 ntBASIC16.33■□□□□ 0.2
PROM1O43490 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.33■□□□□ 0.2
PROM1O43490 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.33■□□□□ 0.2
PROM1O43490 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PROM1O43490 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.33■□□□□ 0.2
PROM1O43490 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PROM1O43490 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PROM1O43490 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms