Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.89□□□□□ -0.19
HMGB3O15347 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 B3GAT3P1-201ENST00000471720 806 ntBASIC13.89□□□□□ -0.19
HMGB3O15347 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC13.89□□□□□ -0.19
HMGB3O15347 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC13.89□□□□□ -0.19
HMGB3O15347 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.89□□□□□ -0.19
HMGB3O15347 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC13.89□□□□□ -0.19
HMGB3O15347 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 AC110285.5-201ENST00000611501 352 ntBASIC13.89□□□□□ -0.19
HMGB3O15347 GXYLT1P5-201ENST00000614548 1189 ntBASIC13.89□□□□□ -0.19
HMGB3O15347 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HMGB3O15347 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HMGB3O15347 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.89□□□□□ -0.19
HMGB3O15347 RNF216P1-203ENST00000404404 2427 ntBASIC13.89□□□□□ -0.19
HMGB3O15347 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
HMGB3O15347 AC022898.2-201ENST00000616822 1312 ntBASIC13.89□□□□□ -0.19
HMGB3O15347 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC13.89□□□□□ -0.19
HMGB3O15347 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HMGB3O15347 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 OR2I1P-210ENST00000642037 4691 ntBASIC13.88□□□□□ -0.19
HMGB3O15347 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 GAS7-202ENST00000396115 929 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 MIR4674-201ENST00000582457 87 ntBASIC13.88□□□□□ -0.19
HMGB3O15347 AL353708.3-201ENST00000610272 989 ntBASIC13.88□□□□□ -0.19
HMGB3O15347 LINC01451-201ENST00000623792 534 ntBASIC13.88□□□□□ -0.19
HMGB3O15347 CABP2-204ENST00000636477 941 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
HMGB3O15347 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.88□□□□□ -0.19
HMGB3O15347 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HMGB3O15347 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HMGB3O15347 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
HMGB3O15347 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HMGB3O15347 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HMGB3O15347 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HMGB3O15347 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms