Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC27.33■■□□□ 1.97
CHD1O14646 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC27.33■■□□□ 1.97
CHD1O14646 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CHD1O14646 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CHD1O14646 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC27.33■■□□□ 1.97
CHD1O14646 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC27.33■■□□□ 1.97
CHD1O14646 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC27.33■■□□□ 1.96
CHD1O14646 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC27.33■■□□□ 1.96
CHD1O14646 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.96
CHD1O14646 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
CHD1O14646 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC27.33■■□□□ 1.96
CHD1O14646 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC27.33■■□□□ 1.96
CHD1O14646 AC243960.2-201ENST00000600996 747 ntBASIC27.33■■□□□ 1.96
CHD1O14646 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC27.32■■□□□ 1.96
CHD1O14646 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
CHD1O14646 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
CHD1O14646 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC27.32■■□□□ 1.96
CHD1O14646 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC27.32■■□□□ 1.96
CHD1O14646 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD1O14646 LINC00896-202ENST00000609602 2128 ntBASIC27.31■■□□□ 1.96
CHD1O14646 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC27.31■■□□□ 1.96
CHD1O14646 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC27.31■■□□□ 1.96
CHD1O14646 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
CHD1O14646 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
CHD1O14646 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CHD1O14646 KRT18P34-201ENST00000488218 1270 ntBASIC27.31■■□□□ 1.96
CHD1O14646 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC27.31■■□□□ 1.96
CHD1O14646 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC27.31■■□□□ 1.96
CHD1O14646 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC27.31■■□□□ 1.96
CHD1O14646 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC27.31■■□□□ 1.96
CHD1O14646 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CHD1O14646 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CHD1O14646 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CHD1O14646 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC27.3■■□□□ 1.96
CHD1O14646 AC093726.1-201ENST00000608064 963 ntBASIC27.3■■□□□ 1.96
CHD1O14646 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
CHD1O14646 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC27.3■■□□□ 1.96
CHD1O14646 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC27.3■■□□□ 1.96
CHD1O14646 STX1A-203ENST00000395155 783 ntTSL 2 BASIC27.3■■□□□ 1.96
CHD1O14646 CTBP2P5-201ENST00000454986 1264 ntBASIC27.3■■□□□ 1.96
CHD1O14646 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC27.3■■□□□ 1.96
CHD1O14646 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC27.3■■□□□ 1.96
CHD1O14646 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC27.3■■□□□ 1.96
CHD1O14646 PPA1-206ENST00000625364 644 ntTSL 5 BASIC27.3■■□□□ 1.96
CHD1O14646 AC004461.2-201ENST00000629517 803 ntBASIC27.3■■□□□ 1.96
CHD1O14646 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CHD1O14646 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC27.3■■□□□ 1.96
CHD1O14646 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC27.29■■□□□ 1.96
CHD1O14646 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC27.29■■□□□ 1.96
CHD1O14646 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC27.29■■□□□ 1.96
CHD1O14646 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC27.29■■□□□ 1.96
CHD1O14646 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC27.29■■□□□ 1.96
CHD1O14646 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC27.29■■□□□ 1.96
CHD1O14646 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC27.29■■□□□ 1.96
CHD1O14646 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 STARD13-205ENST00000439831 945 ntTSL 2 BASIC27.29■■□□□ 1.96
CHD1O14646 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC27.29■■□□□ 1.96
CHD1O14646 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC27.29■■□□□ 1.96
CHD1O14646 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC27.29■■□□□ 1.96
CHD1O14646 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC27.29■■□□□ 1.96
CHD1O14646 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CHD1O14646 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
CHD1O14646 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CHD1O14646 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC27.28■■□□□ 1.96
CHD1O14646 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CHD1O14646 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CHD1O14646 BRWD1P1-201ENST00000401091 371 ntBASIC27.28■■□□□ 1.96
CHD1O14646 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC27.28■■□□□ 1.96
CHD1O14646 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC27.28■■□□□ 1.96
CHD1O14646 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC27.28■■□□□ 1.96
CHD1O14646 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CHD1O14646 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC27.28■■□□□ 1.96
CHD1O14646 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC27.28■■□□□ 1.96
CHD1O14646 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC27.28■■□□□ 1.96
CHD1O14646 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC27.28■■□□□ 1.96
CHD1O14646 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC27.28■■□□□ 1.96
CHD1O14646 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC27.28■■□□□ 1.96
CHD1O14646 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC27.28■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms