Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DRAXINP1-201ENST00000437611 948 ntBASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 TSSC2-201ENST00000450217 709 ntBASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 PCDHB17P-201ENST00000539533 2393 ntBASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHA3Q9Y5H8 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AP002383.4-201ENST00000442518 975 ntBASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 TPSP2-201ENST00000561760 610 ntBASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 BNIP3P18-201ENST00000593976 575 ntBASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHA3Q9Y5H8 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 RCN1P2-201ENST00000398357 915 ntBASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 KRT17P6-201ENST00000453795 1220 ntBASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 Z69720.1-201ENST00000601483 472 ntBASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHA3Q9Y5H8 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHA3Q9Y5H8 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.46
PCDHA3Q9Y5H8 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
PCDHA3Q9Y5H8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
PCDHA3Q9Y5H8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 IGHV3-47-201ENST00000425060 335 ntBASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 MINOS1P3-201ENST00000457048 203 ntBASIC17.95■□□□□ 0.46
PCDHA3Q9Y5H8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms