Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 RHOQP3-201ENST00000437982 621 ntBASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 AP006288.1-201ENST00000446065 395 ntBASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CTDP1Q9Y5B0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 PMS2P2-201ENST00000425039 1128 ntBASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 AL513480.1-201ENST00000451731 511 ntBASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CTDP1Q9Y5B0 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 LINC00304-203ENST00000565008 1864 ntBASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 FAM58CP-201ENST00000435741 640 ntBASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 YBX1P5-201ENST00000509441 847 ntBASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 AL354751.1-201ENST00000412768 1863 ntBASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.84■□□□□ 0.77
CTDP1Q9Y5B0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 ELL2P1-201ENST00000413990 1906 ntBASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 AC254562.1-201ENST00000417586 456 ntBASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.83■□□□□ 0.77
CTDP1Q9Y5B0 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTDP1Q9Y5B0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTDP1Q9Y5B0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CTDP1Q9Y5B0 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms