Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.52■□□□□ 0.23
VPS29Q9UBQ0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.52■□□□□ 0.23
VPS29Q9UBQ0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
VPS29Q9UBQ0 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
VPS29Q9UBQ0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VPS29Q9UBQ0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AGGF1P2-201ENST00000426656 2106 ntBASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 NUS1P2-201ENST00000417358 873 ntBASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 KRT16P4-201ENST00000453883 522 ntBASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AL591684.3-201ENST00000605187 298 ntBASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AC093458.2-201ENST00000623150 629 ntBASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AC148477.5-201ENST00000625164 1645 ntBASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS29Q9UBQ0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 MIR1224-201ENST00000408193 85 ntBASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 ACTG1P4-201ENST00000425123 1122 ntBASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 SIGLEC16-201ENST00000599858 1437 ntBASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS29Q9UBQ0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.49■□□□□ 0.23
VPS29Q9UBQ0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms