Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 KRT8P10-201ENST00000450021 1447 ntBASIC17.09■□□□□ 0.33
SSU72Q9NP77 AL353593.2-201ENST00000602529 1483 ntBASIC17.09■□□□□ 0.33
SSU72Q9NP77 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 AC009336.1-201ENST00000608941 1553 ntBASIC17.09■□□□□ 0.33
SSU72Q9NP77 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 AL596257.1-201ENST00000641463 2694 ntBASIC17.09■□□□□ 0.33
SSU72Q9NP77 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SSU72Q9NP77 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSU72Q9NP77 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.33
SSU72Q9NP77 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.08■□□□□ 0.33
SSU72Q9NP77 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.08■□□□□ 0.33
SSU72Q9NP77 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
SSU72Q9NP77 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.08■□□□□ 0.33
SSU72Q9NP77 ALOX12P2-203ENST00000570921 1945 ntBASIC17.08■□□□□ 0.33
SSU72Q9NP77 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
SSU72Q9NP77 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SSU72Q9NP77 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.08■□□□□ 0.32
SSU72Q9NP77 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.08■□□□□ 0.32
SSU72Q9NP77 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 AC140113.3-201ENST00000605663 199 ntBASIC17.08■□□□□ 0.32
SSU72Q9NP77 AL390719.2-201ENST00000606993 987 ntBASIC17.08■□□□□ 0.32
SSU72Q9NP77 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 AC008894.3-201ENST00000624324 3103 ntBASIC17.08■□□□□ 0.32
SSU72Q9NP77 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SSU72Q9NP77 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSU72Q9NP77 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 AC125634.1-201ENST00000438758 1403 ntBASIC17.07■□□□□ 0.32
SSU72Q9NP77 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 SNORA78-201ENST00000459373 127 ntBASIC17.07■□□□□ 0.32
SSU72Q9NP77 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSU72Q9NP77 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms