Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.75■□□□□ 0.43
CDX2Q99626 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.75■□□□□ 0.43
CDX2Q99626 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDX2Q99626 AC006538.1-201ENST00000567905 1585 ntBASIC17.74■□□□□ 0.43
CDX2Q99626 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.74■□□□□ 0.43
CDX2Q99626 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.74■□□□□ 0.43
CDX2Q99626 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CDX2Q99626 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 AC098850.1-201ENST00000419919 790 ntBASIC17.74■□□□□ 0.43
CDX2Q99626 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
CDX2Q99626 TPRX2P-201ENST00000535362 881 ntBASIC17.74■□□□□ 0.43
CDX2Q99626 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.74■□□□□ 0.43
CDX2Q99626 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.74■□□□□ 0.43
CDX2Q99626 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 WFDC1-204ENST00000613603 549 ntBASIC17.74■□□□□ 0.43
CDX2Q99626 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.74■□□□□ 0.43
CDX2Q99626 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.74■□□□□ 0.43
CDX2Q99626 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CDX2Q99626 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CDX2Q99626 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.73■□□□□ 0.43
CDX2Q99626 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CDX2Q99626 MEP1AP4-201ENST00000423244 1087 ntBASIC17.73■□□□□ 0.43
CDX2Q99626 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CDX2Q99626 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.73■□□□□ 0.43
CDX2Q99626 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.73■□□□□ 0.43
CDX2Q99626 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 SRD5A3P1-201ENST00000603021 949 ntBASIC17.73■□□□□ 0.43
CDX2Q99626 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.73■□□□□ 0.43
CDX2Q99626 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CDX2Q99626 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.73■□□□□ 0.43
CDX2Q99626 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CDX2Q99626 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CDX2Q99626 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.72■□□□□ 0.43
CDX2Q99626 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.72■□□□□ 0.43
CDX2Q99626 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 AC099336.1-201ENST00000417053 1171 ntBASIC17.72■□□□□ 0.43
CDX2Q99626 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.72■□□□□ 0.43
CDX2Q99626 AC114501.2-201ENST00000439631 535 ntBASIC17.72■□□□□ 0.43
CDX2Q99626 KLF2P4-201ENST00000451959 1225 ntBASIC17.72■□□□□ 0.43
CDX2Q99626 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.72■□□□□ 0.43
CDX2Q99626 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 AC105021.1-202ENST00000570572 669 ntBASIC17.72■□□□□ 0.43
CDX2Q99626 AL133215.2-201ENST00000609242 977 ntBASIC17.72■□□□□ 0.43
CDX2Q99626 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CDX2Q99626 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CDX2Q99626 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CDX2Q99626 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX2Q99626 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.71■□□□□ 0.43
CDX2Q99626 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX2Q99626 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.71■□□□□ 0.43
CDX2Q99626 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms