Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.55■□□□□ 0.24
VMP1Q96GC9 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VMP1Q96GC9 PCDHB19P-201ENST00000570871 2371 ntBASIC16.55■□□□□ 0.24
VMP1Q96GC9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.55■□□□□ 0.24
VMP1Q96GC9 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 UNC93B7-201ENST00000509439 705 ntBASIC16.54■□□□□ 0.24
VMP1Q96GC9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 RN7SL510P-201ENST00000581311 263 ntBASIC16.54■□□□□ 0.24
VMP1Q96GC9 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.54■□□□□ 0.24
VMP1Q96GC9 PCDH8P1-201ENST00000428983 2773 ntBASIC16.54■□□□□ 0.24
VMP1Q96GC9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VMP1Q96GC9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 FAM220CP-201ENST00000395253 831 ntBASIC16.53■□□□□ 0.24
VMP1Q96GC9 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 AC007967.3-201ENST00000434308 558 ntBASIC16.53■□□□□ 0.24
VMP1Q96GC9 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 FAAHP1-202ENST00000446499 1238 ntBASIC16.53■□□□□ 0.24
VMP1Q96GC9 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VMP1Q96GC9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.53■□□□□ 0.24
VMP1Q96GC9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms