Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TTC28Q96AY4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TTC28Q96AY4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TTC28Q96AY4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TTC28Q96AY4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TTC28Q96AY4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.21■□□□□ 0.35
TTC28Q96AY4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TTC28Q96AY4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TTC28Q96AY4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.21■□□□□ 0.35
TTC28Q96AY4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TTC28Q96AY4 BX276092.7-203ENST00000637198 1536 ntBASIC17.21■□□□□ 0.35
TTC28Q96AY4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
TTC28Q96AY4 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
TTC28Q96AY4 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.21■□□□□ 0.34
TTC28Q96AY4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.21■□□□□ 0.34
TTC28Q96AY4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.21■□□□□ 0.34
TTC28Q96AY4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
TTC28Q96AY4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.21■□□□□ 0.34
TTC28Q96AY4 AC123567.1-201ENST00000548294 1261 ntBASIC17.21■□□□□ 0.34
TTC28Q96AY4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TTC28Q96AY4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 HLA-H-201ENST00000383620 1096 ntBASIC17.2■□□□□ 0.34
TTC28Q96AY4 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 KRT18P34-201ENST00000488218 1270 ntBASIC17.2■□□□□ 0.34
TTC28Q96AY4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.2■□□□□ 0.34
TTC28Q96AY4 RRP7BP-205ENST00000566851 833 ntBASIC17.2■□□□□ 0.34
TTC28Q96AY4 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 AC025048.3-201ENST00000590609 569 ntBASIC17.2■□□□□ 0.34
TTC28Q96AY4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TTC28Q96AY4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AL008638.5-201ENST00000623814 1298 ntBASIC17.19■□□□□ 0.34
TTC28Q96AY4 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TTC28Q96AY4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.19■□□□□ 0.34
TTC28Q96AY4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TTC28Q96AY4 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TTC28Q96AY4 AC104306.2-201ENST00000451877 341 ntBASIC17.18■□□□□ 0.34
TTC28Q96AY4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms