Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CCDC144BQ3MJ40 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 AC103564.2-201ENST00000432853 1299 ntBASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 PGM5P2-202ENST00000637225 1043 ntBASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 AL139384.1-201ENST00000612143 3047 ntBASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC144BQ3MJ40 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 AC002347.1-201ENST00000569543 541 ntBASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 AC073592.5-201ENST00000624854 528 ntBASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 AL121761.2-201ENST00000598007 1648 ntBASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC144BQ3MJ40 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 COX5BP2-201ENST00000392354 334 ntBASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AC108751.1-201ENST00000490852 363 ntBASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AC136632.2-201ENST00000512891 861 ntBASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 AC064836.3-201ENST00000607928 673 ntBASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC144BQ3MJ40 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms