Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.95■□□□□ 0.62
PEX3P56589 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.95■□□□□ 0.62
PEX3P56589 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.95■□□□□ 0.62
PEX3P56589 AC008667.4-201ENST00000607370 168 ntBASIC18.95■□□□□ 0.62
PEX3P56589 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PEX3P56589 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.95■□□□□ 0.62
PEX3P56589 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.95■□□□□ 0.62
PEX3P56589 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PEX3P56589 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.95■□□□□ 0.62
PEX3P56589 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
PEX3P56589 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.95■□□□□ 0.62
PEX3P56589 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PEX3P56589 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.94■□□□□ 0.62
PEX3P56589 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 AC104109.2-201ENST00000602919 1418 ntBASIC18.94■□□□□ 0.62
PEX3P56589 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PEX3P56589 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.94■□□□□ 0.62
PEX3P56589 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.94■□□□□ 0.62
PEX3P56589 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.94■□□□□ 0.62
PEX3P56589 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.94■□□□□ 0.62
PEX3P56589 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.94■□□□□ 0.62
PEX3P56589 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
PEX3P56589 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.94■□□□□ 0.62
PEX3P56589 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PEX3P56589 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PEX3P56589 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PEX3P56589 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 AL022342.1-201ENST00000400363 863 ntBASIC18.93■□□□□ 0.62
PEX3P56589 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.93■□□□□ 0.62
PEX3P56589 AP000347.1-202ENST00000435868 847 ntBASIC18.93■□□□□ 0.62
PEX3P56589 AC009947.1-201ENST00000444350 727 ntBASIC18.93■□□□□ 0.62
PEX3P56589 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.93■□□□□ 0.62
PEX3P56589 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.93■□□□□ 0.62
PEX3P56589 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 IGHV3-65-201ENST00000523210 341 ntBASIC18.93■□□□□ 0.62
PEX3P56589 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.93■□□□□ 0.62
PEX3P56589 AC145285.3-201ENST00000564603 959 ntBASIC18.93■□□□□ 0.62
PEX3P56589 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PEX3P56589 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.93■□□□□ 0.62
PEX3P56589 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.93■□□□□ 0.62
PEX3P56589 TERC-201ENST00000602385 541 ntBASIC18.93■□□□□ 0.62
PEX3P56589 AF228730.7-201ENST00000641842 219 ntBASIC18.93■□□□□ 0.62
PEX3P56589 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.93■□□□□ 0.62
PEX3P56589 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.93■□□□□ 0.62
PEX3P56589 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
PEX3P56589 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PEX3P56589 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PEX3P56589 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PEX3P56589 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PEX3P56589 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PEX3P56589 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PEX3P56589 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PEX3P56589 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
PEX3P56589 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PEX3P56589 AC108073.2-201ENST00000464002 357 ntBASIC18.92■□□□□ 0.62
PEX3P56589 AC108751.1-201ENST00000490852 363 ntBASIC18.92■□□□□ 0.62
PEX3P56589 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.92■□□□□ 0.62
PEX3P56589 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.92■□□□□ 0.62
PEX3P56589 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.92■□□□□ 0.62
PEX3P56589 Z83851.2-201ENST00000609564 659 ntBASIC18.92■□□□□ 0.62
PEX3P56589 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.92■□□□□ 0.62
PEX3P56589 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PEX3P56589 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.92■□□□□ 0.62
PEX3P56589 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.92■□□□□ 0.62
PEX3P56589 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PEX3P56589 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms