Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMK1P53667 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMK1P53667 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.98■□□□□ 0.31
LIMK1P53667 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMK1P53667 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.98■□□□□ 0.31
LIMK1P53667 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
LIMK1P53667 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMK1P53667 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIMK1P53667 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.98■□□□□ 0.31
LIMK1P53667 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.97■□□□□ 0.31
LIMK1P53667 AL355306.1-201ENST00000415580 579 ntBASIC16.97■□□□□ 0.31
LIMK1P53667 FAM185BP-201ENST00000443595 716 ntBASIC16.97■□□□□ 0.31
LIMK1P53667 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.97■□□□□ 0.31
LIMK1P53667 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.97■□□□□ 0.31
LIMK1P53667 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMK1P53667 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMK1P53667 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
LIMK1P53667 AC120498.9-201ENST00000339021 3867 ntBASIC16.96■□□□□ 0.31
LIMK1P53667 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMK1P53667 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.96■□□□□ 0.31
LIMK1P53667 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
LIMK1P53667 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
LIMK1P53667 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMK1P53667 SPDYE11-202ENST00000450699 704 ntBASIC16.96■□□□□ 0.31
LIMK1P53667 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 AC140878.1-201ENST00000565277 250 ntBASIC16.96■□□□□ 0.31
LIMK1P53667 SPDYE9P-201ENST00000570642 692 ntBASIC16.96■□□□□ 0.31
LIMK1P53667 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 SPDYE10P-202ENST00000612005 668 ntBASIC16.96■□□□□ 0.31
LIMK1P53667 SPDYE8P-202ENST00000612377 668 ntBASIC16.96■□□□□ 0.31
LIMK1P53667 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
LIMK1P53667 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMK1P53667 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
LIMK1P53667 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.96■□□□□ 0.31
LIMK1P53667 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
LIMK1P53667 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
LIMK1P53667 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
LIMK1P53667 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.96■□□□□ 0.3
LIMK1P53667 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LIMK1P53667 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMK1P53667 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
LIMK1P53667 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.96■□□□□ 0.3
LIMK1P53667 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms