Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC236430.1-201ENST00000402231 743 ntBASIC21.2■□□□□ 0.98
NUP98P52948 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.2■□□□□ 0.98
NUP98P52948 AC125807.1-201ENST00000483097 614 ntBASIC21.2■□□□□ 0.98
NUP98P52948 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NUP98P52948 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC21.2■□□□□ 0.98
NUP98P52948 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC21.2■□□□□ 0.98
NUP98P52948 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NUP98P52948 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.19■□□□□ 0.98
NUP98P52948 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.19■□□□□ 0.98
NUP98P52948 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 SPDYE7P-202ENST00000420373 878 ntBASIC21.19■□□□□ 0.98
NUP98P52948 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.19■□□□□ 0.98
NUP98P52948 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC21.19■□□□□ 0.98
NUP98P52948 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.19■□□□□ 0.98
NUP98P52948 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 LINC00895-201ENST00000629028 1637 ntBASIC21.19■□□□□ 0.98
NUP98P52948 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
NUP98P52948 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUP98P52948 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.19■□□□□ 0.98
NUP98P52948 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.19■□□□□ 0.98
NUP98P52948 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.18■□□□□ 0.98
NUP98P52948 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.18■□□□□ 0.98
NUP98P52948 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.18■□□□□ 0.98
NUP98P52948 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
NUP98P52948 FO538757.1-201ENST00000623083 1397 ntBASIC21.18■□□□□ 0.98
NUP98P52948 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC21.18■□□□□ 0.98
NUP98P52948 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.18■□□□□ 0.98
NUP98P52948 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.18■□□□□ 0.98
NUP98P52948 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.18■□□□□ 0.98
NUP98P52948 AL158211.3-201ENST00000607385 239 ntBASIC21.18■□□□□ 0.98
NUP98P52948 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.18■□□□□ 0.98
NUP98P52948 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUP98P52948 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.17■□□□□ 0.98
NUP98P52948 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC21.17■□□□□ 0.98
NUP98P52948 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC21.17■□□□□ 0.98
NUP98P52948 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NUP98P52948 AL021920.2-201ENST00000624828 1351 ntBASIC21.17■□□□□ 0.98
NUP98P52948 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC21.17■□□□□ 0.98
NUP98P52948 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.17■□□□□ 0.98
NUP98P52948 AC002472.2-201ENST00000442739 958 ntBASIC21.17■□□□□ 0.98
NUP98P52948 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.17■□□□□ 0.98
NUP98P52948 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.17■□□□□ 0.98
NUP98P52948 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.17■□□□□ 0.98
NUP98P52948 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
NUP98P52948 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.17■□□□□ 0.98
NUP98P52948 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUP98P52948 KRT8P49-201ENST00000604166 1432 ntBASIC21.17■□□□□ 0.98
NUP98P52948 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.17■□□□□ 0.98
NUP98P52948 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NUP98P52948 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.16■□□□□ 0.98
NUP98P52948 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.16■□□□□ 0.98
NUP98P52948 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUP98P52948 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUP98P52948 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUP98P52948 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.16■□□□□ 0.98
NUP98P52948 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUP98P52948 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.16■□□□□ 0.98
NUP98P52948 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUP98P52948 AC105233.2-201ENST00000523697 349 ntBASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms