Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.9■□□□□ 0.3
SHMT2P34897 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.9■□□□□ 0.3
SHMT2P34897 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 SLC25A6P4-201ENST00000586535 553 ntBASIC16.9■□□□□ 0.3
SHMT2P34897 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.9■□□□□ 0.3
SHMT2P34897 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.9■□□□□ 0.3
SHMT2P34897 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SHMT2P34897 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SHMT2P34897 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.9■□□□□ 0.3
SHMT2P34897 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHMT2P34897 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHMT2P34897 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
SHMT2P34897 AC046185.3-201ENST00000623228 1824 ntBASIC16.89■□□□□ 0.29
SHMT2P34897 AC148477.5-201ENST00000625164 1645 ntBASIC16.89■□□□□ 0.29
SHMT2P34897 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
SHMT2P34897 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHMT2P34897 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SHMT2P34897 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHMT2P34897 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHMT2P34897 MRPL3P1-201ENST00000400109 1033 ntBASIC16.89■□□□□ 0.29
SHMT2P34897 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.89■□□□□ 0.29
SHMT2P34897 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
SHMT2P34897 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 AC025062.2-201ENST00000605477 670 ntBASIC16.89■□□□□ 0.29
SHMT2P34897 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SHMT2P34897 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHMT2P34897 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHMT2P34897 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
SHMT2P34897 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHMT2P34897 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHMT2P34897 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SHMT2P34897 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.88■□□□□ 0.29
SHMT2P34897 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SHMT2P34897 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SHMT2P34897 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 AP001005.1-201ENST00000571755 1248 ntBASIC16.88■□□□□ 0.29
SHMT2P34897 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.88■□□□□ 0.29
SHMT2P34897 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.88■□□□□ 0.29
SHMT2P34897 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SHMT2P34897 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.88■□□□□ 0.29
SHMT2P34897 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.88■□□□□ 0.29
SHMT2P34897 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SHMT2P34897 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.87■□□□□ 0.29
SHMT2P34897 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SHMT2P34897 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.87■□□□□ 0.29
SHMT2P34897 LAGE3P1-201ENST00000425356 484 ntBASIC16.87■□□□□ 0.29
SHMT2P34897 AC093909.1-201ENST00000504731 1122 ntBASIC16.87■□□□□ 0.29
SHMT2P34897 OR7E14P-202ENST00000530490 1290 ntBASIC16.87■□□□□ 0.29
SHMT2P34897 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.87■□□□□ 0.29
SHMT2P34897 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms