Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN4P29074 AL845331.1-201ENST00000424978 1190 ntBASIC17.34■□□□□ 0.37
PTPN4P29074 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 FAAHP1-202ENST00000446499 1238 ntBASIC17.34■□□□□ 0.37
PTPN4P29074 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 UNC93B7-201ENST00000509439 705 ntBASIC17.34■□□□□ 0.37
PTPN4P29074 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN4P29074 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.34■□□□□ 0.37
PTPN4P29074 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.34■□□□□ 0.37
PTPN4P29074 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.34■□□□□ 0.37
PTPN4P29074 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PTPN4P29074 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PTPN4P29074 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.33■□□□□ 0.37
PTPN4P29074 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN4P29074 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
PTPN4P29074 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN4P29074 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN4P29074 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN4P29074 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.33■□□□□ 0.37
PTPN4P29074 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
PTPN4P29074 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN4P29074 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PTPN4P29074 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.33■□□□□ 0.37
PTPN4P29074 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.33■□□□□ 0.36
PTPN4P29074 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.33■□□□□ 0.36
PTPN4P29074 TOB2P1-201ENST00000469761 992 ntBASIC17.33■□□□□ 0.36
PTPN4P29074 AC012615.1-201ENST00000565797 1299 ntBASIC17.33■□□□□ 0.36
PTPN4P29074 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN4P29074 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTPN4P29074 GPR32P1-201ENST00000601788 811 ntBASIC17.33■□□□□ 0.36
PTPN4P29074 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 AL121772.3-201ENST00000610840 674 ntBASIC17.33■□□□□ 0.36
PTPN4P29074 IGHV3-41-201ENST00000613121 348 ntBASIC17.33■□□□□ 0.36
PTPN4P29074 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTPN4P29074 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN4P29074 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
PTPN4P29074 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.33■□□□□ 0.36
PTPN4P29074 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN4P29074 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PTPN4P29074 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PTPN4P29074 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.33■□□□□ 0.36
PTPN4P29074 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PTPN4P29074 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.32■□□□□ 0.36
PTPN4P29074 TSPY19P-201ENST00000418461 509 ntBASIC17.32■□□□□ 0.36
PTPN4P29074 TSPY18P-201ENST00000441642 509 ntBASIC17.32■□□□□ 0.36
PTPN4P29074 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.32■□□□□ 0.36
PTPN4P29074 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.32■□□□□ 0.36
PTPN4P29074 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 LINC01451-201ENST00000623792 534 ntBASIC17.32■□□□□ 0.36
PTPN4P29074 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.32■□□□□ 0.36
PTPN4P29074 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PTPN4P29074 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PTPN4P29074 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms