Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
SMARCA1P28370 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCA1P28370 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.67■□□□□ 0.74
SMARCA1P28370 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 ACTL9-202ENST00000612068 1252 ntBASIC19.67■□□□□ 0.74
SMARCA1P28370 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCA1P28370 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SMARCA1P28370 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCA1P28370 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCA1P28370 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCA1P28370 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SMARCA1P28370 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SMARCA1P28370 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SMARCA1P28370 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCA1P28370 AC007967.2-201ENST00000432613 625 ntBASIC19.66■□□□□ 0.74
SMARCA1P28370 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCA1P28370 AC005412.3-201ENST00000580309 715 ntBASIC19.66■□□□□ 0.74
SMARCA1P28370 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCA1P28370 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.66■□□□□ 0.74
SMARCA1P28370 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
SMARCA1P28370 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCA1P28370 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCA1P28370 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCA1P28370 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCA1P28370 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCA1P28370 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCA1P28370 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCA1P28370 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCA1P28370 AP001094.4-201ENST00000579008 2176 ntBASIC19.65■□□□□ 0.74
SMARCA1P28370 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 PMS2P7-201ENST00000506558 1336 ntBASIC19.65■□□□□ 0.74
SMARCA1P28370 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SMARCA1P28370 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCA1P28370 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCA1P28370 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 BCL2-203ENST00000589955 5011 ntBASIC19.65■□□□□ 0.74
SMARCA1P28370 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCA1P28370 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCA1P28370 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCA1P28370 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCA1P28370 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMARCA1P28370 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
SMARCA1P28370 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms