Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH3P20585 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
MSH3P20585 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH3P20585 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.15■□□□□ 0.34
MSH3P20585 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MSH3P20585 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 AP002469.2-201ENST00000531724 424 ntBASIC17.15■□□□□ 0.34
MSH3P20585 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.15■□□□□ 0.34
MSH3P20585 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.15■□□□□ 0.34
MSH3P20585 AC104692.2-201ENST00000603054 253 ntBASIC17.15■□□□□ 0.34
MSH3P20585 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
MSH3P20585 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.15■□□□□ 0.34
MSH3P20585 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MSH3P20585 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
MSH3P20585 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
MSH3P20585 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 NCF1C-201ENST00000438382 1427 ntBASIC17.14■□□□□ 0.33
MSH3P20585 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 AP001094.4-201ENST00000579008 2176 ntBASIC17.14■□□□□ 0.33
MSH3P20585 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
MSH3P20585 CROCCP1-201ENST00000426910 5675 ntBASIC17.14■□□□□ 0.33
MSH3P20585 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH3P20585 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.14■□□□□ 0.33
MSH3P20585 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
MSH3P20585 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.14■□□□□ 0.33
MSH3P20585 KRT18P67-201ENST00000432816 1264 ntBASIC17.14■□□□□ 0.33
MSH3P20585 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.14■□□□□ 0.33
MSH3P20585 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
MSH3P20585 AC025062.2-201ENST00000605477 670 ntBASIC17.14■□□□□ 0.33
MSH3P20585 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MSH3P20585 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
MSH3P20585 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
MSH3P20585 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH3P20585 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.14■□□□□ 0.33
MSH3P20585 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
MSH3P20585 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MSH3P20585 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MSH3P20585 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.13■□□□□ 0.33
MSH3P20585 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.13■□□□□ 0.33
MSH3P20585 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.13■□□□□ 0.33
MSH3P20585 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.13■□□□□ 0.33
MSH3P20585 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MSH3P20585 LINC00982-205ENST00000420957 435 ntBASIC17.13■□□□□ 0.33
MSH3P20585 ACTG1P4-201ENST00000425123 1122 ntBASIC17.13■□□□□ 0.33
MSH3P20585 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.13■□□□□ 0.33
MSH3P20585 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.13■□□□□ 0.33
MSH3P20585 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms