Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
NPHP1O15259 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP1O15259 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP1O15259 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.64■■□□□ 1.06
NPHP1O15259 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
NPHP1O15259 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP1O15259 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP1O15259 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP1O15259 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.06
NPHP1O15259 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP1O15259 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP1O15259 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
NPHP1O15259 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.64■■□□□ 1.05
NPHP1O15259 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP1O15259 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP1O15259 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP1O15259 AC002056.1-201ENST00000395613 760 ntBASIC21.64■■□□□ 1.05
NPHP1O15259 AC005237.2-201ENST00000434368 219 ntBASIC21.64■■□□□ 1.05
NPHP1O15259 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.64■■□□□ 1.05
NPHP1O15259 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.64■■□□□ 1.05
NPHP1O15259 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.64■■□□□ 1.05
NPHP1O15259 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP1O15259 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.64■■□□□ 1.05
NPHP1O15259 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP1O15259 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP1O15259 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
NPHP1O15259 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP1O15259 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP1O15259 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
NPHP1O15259 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 AL121761.2-201ENST00000598007 1648 ntBASIC21.63■■□□□ 1.05
NPHP1O15259 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.63■■□□□ 1.05
NPHP1O15259 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.63■■□□□ 1.05
NPHP1O15259 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP1O15259 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.63■■□□□ 1.05
NPHP1O15259 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.63■■□□□ 1.05
NPHP1O15259 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.63■■□□□ 1.05
NPHP1O15259 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP1O15259 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPHP1O15259 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
NPHP1O15259 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP1O15259 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP1O15259 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP1O15259 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP1O15259 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 AC046185.3-201ENST00000623228 1824 ntBASIC21.62■■□□□ 1.05
NPHP1O15259 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP1O15259 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP1O15259 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 PAWRP1-201ENST00000451083 565 ntBASIC21.62■■□□□ 1.05
NPHP1O15259 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP1O15259 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP1O15259 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP1O15259 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP1O15259 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.62■■□□□ 1.05
NPHP1O15259 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.62■■□□□ 1.05
NPHP1O15259 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP1O15259 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.62■■□□□ 1.05
NPHP1O15259 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.62■■□□□ 1.05
NPHP1O15259 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPHP1O15259 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
NPHP1O15259 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.61■■□□□ 1.05
NPHP1O15259 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPHP1O15259 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
NPHP1O15259 OR6D1P-203ENST00000641209 4860 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms