Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
SMC4Q9NTJ3 RP9P-202ENST00000450133 1212 ntBASIC31.14■■■□□ 2.58
SMC4Q9NTJ3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SMC4Q9NTJ3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.57
SMC4Q9NTJ3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SMC4Q9NTJ3 DUSP8P4-201ENST00000399538 1761 ntBASIC31.13■■■□□ 2.57
SMC4Q9NTJ3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SMC4Q9NTJ3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC31.13■■■□□ 2.57
SMC4Q9NTJ3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SMC4Q9NTJ3 AC093536.1-201ENST00000569153 554 ntBASIC31.12■■■□□ 2.57
SMC4Q9NTJ3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.12■■■□□ 2.57
SMC4Q9NTJ3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
SMC4Q9NTJ3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SMC4Q9NTJ3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
SMC4Q9NTJ3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SMC4Q9NTJ3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
SMC4Q9NTJ3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
SMC4Q9NTJ3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SMC4Q9NTJ3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.1■■■□□ 2.57
SMC4Q9NTJ3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.1■■■□□ 2.57
SMC4Q9NTJ3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
SMC4Q9NTJ3 RARRES2P2-201ENST00000394842 485 ntBASIC31.1■■■□□ 2.57
SMC4Q9NTJ3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
SMC4Q9NTJ3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC31.09■■■□□ 2.57
SMC4Q9NTJ3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SMC4Q9NTJ3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SMC4Q9NTJ3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
SMC4Q9NTJ3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
SMC4Q9NTJ3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.07■■■□□ 2.56
SMC4Q9NTJ3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
SMC4Q9NTJ3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SMC4Q9NTJ3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.07■■■□□ 2.56
SMC4Q9NTJ3 AC010501.1-201ENST00000606270 1962 ntBASIC31.06■■■□□ 2.56
SMC4Q9NTJ3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SMC4Q9NTJ3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
SMC4Q9NTJ3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
SMC4Q9NTJ3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.05■■■□□ 2.56
SMC4Q9NTJ3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC31.04■■■□□ 2.56
SMC4Q9NTJ3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SMC4Q9NTJ3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31.04■■■□□ 2.56
SMC4Q9NTJ3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
SMC4Q9NTJ3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.03■■■□□ 2.56
SMC4Q9NTJ3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
SMC4Q9NTJ3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.03■■■□□ 2.56
SMC4Q9NTJ3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.02■■■□□ 2.56
SMC4Q9NTJ3 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.02■■■□□ 2.56
SMC4Q9NTJ3 AC026202.3-201ENST00000600805 1127 ntBASIC31.02■■■□□ 2.56
SMC4Q9NTJ3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC31.02■■■□□ 2.56
SMC4Q9NTJ3 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
SMC4Q9NTJ3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
SMC4Q9NTJ3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.01■■■□□ 2.55
SMC4Q9NTJ3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SMC4Q9NTJ3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31■■■□□ 2.55
SMC4Q9NTJ3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC31■■■□□ 2.55
SMC4Q9NTJ3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
SMC4Q9NTJ3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
SMC4Q9NTJ3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31■■■□□ 2.55
SMC4Q9NTJ3 RAP2CP1-202ENST00000605179 643 ntBASIC31■■■□□ 2.55
SMC4Q9NTJ3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
SMC4Q9NTJ3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC30.99■■■□□ 2.55
SMC4Q9NTJ3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
SMC4Q9NTJ3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.99■■■□□ 2.55
SMC4Q9NTJ3 AC096887.2-201ENST00000623443 1957 ntBASIC30.99■■■□□ 2.55
SMC4Q9NTJ3 AC009831.1-201ENST00000580420 1582 ntBASIC30.98■■■□□ 2.55
SMC4Q9NTJ3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
SMC4Q9NTJ3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
SMC4Q9NTJ3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SMC4Q9NTJ3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SMC4Q9NTJ3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SMC4Q9NTJ3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
SMC4Q9NTJ3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
SMC4Q9NTJ3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC30.96■■■□□ 2.55
SMC4Q9NTJ3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
SMC4Q9NTJ3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
SMC4Q9NTJ3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
SMC4Q9NTJ3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
SMC4Q9NTJ3 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
SMC4Q9NTJ3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
SMC4Q9NTJ3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.95■■■□□ 2.54
SMC4Q9NTJ3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.54
SMC4Q9NTJ3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
SMC4Q9NTJ3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SMC4Q9NTJ3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC30.94■■■□□ 2.54
SMC4Q9NTJ3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SMC4Q9NTJ3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SMC4Q9NTJ3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC30.93■■■□□ 2.54
SMC4Q9NTJ3 AC133552.2-201ENST00000619106 1032 ntBASIC30.93■■■□□ 2.54
SMC4Q9NTJ3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SMC4Q9NTJ3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SMC4Q9NTJ3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
SMC4Q9NTJ3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
SMC4Q9NTJ3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC30.92■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 1219.9 ms