Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.3■□□□□ 0.68
CLRN3Q8NCR9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLRN3Q8NCR9 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CLRN3Q8NCR9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CLRN3Q8NCR9 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.27■□□□□ 0.68
CLRN3Q8NCR9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CLRN3Q8NCR9 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CLRN3Q8NCR9 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CLRN3Q8NCR9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLRN3Q8NCR9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CLRN3Q8NCR9 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CLRN3Q8NCR9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CLRN3Q8NCR9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.27■□□□□ 0.67
CLRN3Q8NCR9 AC097639.1-201ENST00000565519 1891 ntBASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLRN3Q8NCR9 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 RNF165-205ENST00000588679 2904 ntBASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLRN3Q8NCR9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 AP002414.2-202ENST00000590929 1450 ntBASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CLRN3Q8NCR9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 AC022211.4-201ENST00000625094 2161 ntBASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLRN3Q8NCR9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLRN3Q8NCR9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.21■□□□□ 0.67
CLRN3Q8NCR9 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN3Q8NCR9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.2■□□□□ 0.66
CLRN3Q8NCR9 AC100797.4-201ENST00000631653 1827 ntBASIC19.2■□□□□ 0.66
CLRN3Q8NCR9 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLRN3Q8NCR9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.2■□□□□ 0.66
CLRN3Q8NCR9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN3Q8NCR9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLRN3Q8NCR9 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLRN3Q8NCR9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms