Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC28AQ8IWP9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC28AQ8IWP9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC28AQ8IWP9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28AQ8IWP9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28AQ8IWP9 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
CCDC28AQ8IWP9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28AQ8IWP9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC28AQ8IWP9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28AQ8IWP9 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC28AQ8IWP9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC28AQ8IWP9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCDC28AQ8IWP9 C1orf229-201ENST00000623686 2258 ntBASIC20.06■□□□□ 0.8
CCDC28AQ8IWP9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CCDC28AQ8IWP9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 PKD1P6-201ENST00000343738 4769 ntBASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCDC28AQ8IWP9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 LINC00565-201ENST00000562710 2331 ntBASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCDC28AQ8IWP9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.03■□□□□ 0.8
CCDC28AQ8IWP9 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28AQ8IWP9 AL117328.2-201ENST00000624617 1940 ntBASIC20.02■□□□□ 0.8
CCDC28AQ8IWP9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CCDC28AQ8IWP9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
CCDC28AQ8IWP9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC28AQ8IWP9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.02■□□□□ 0.8
CCDC28AQ8IWP9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CCDC28AQ8IWP9 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CCDC28AQ8IWP9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC28AQ8IWP9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 DUSP8P5-201ENST00000422884 1815 ntBASIC20■□□□□ 0.79
CCDC28AQ8IWP9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC28AQ8IWP9 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28AQ8IWP9 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28AQ8IWP9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CCDC28AQ8IWP9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28AQ8IWP9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC28AQ8IWP9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC28AQ8IWP9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28AQ8IWP9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28AQ8IWP9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC28AQ8IWP9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC28AQ8IWP9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC28AQ8IWP9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC28AQ8IWP9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC28AQ8IWP9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms