Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.89■■□□□ 1.41
NUDCD3Q8IVD9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
NUDCD3Q8IVD9 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NUDCD3Q8IVD9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NUDCD3Q8IVD9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
NUDCD3Q8IVD9 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NUDCD3Q8IVD9 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NUDCD3Q8IVD9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 DUX4L29-201ENST00000425409 679 ntBASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 AL162393.1-201ENST00000437852 946 ntBASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.86■■□□□ 1.41
NUDCD3Q8IVD9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NUDCD3Q8IVD9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
NUDCD3Q8IVD9 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.83■■□□□ 1.41
NUDCD3Q8IVD9 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NUDCD3Q8IVD9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC23.83■■□□□ 1.41
NUDCD3Q8IVD9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.83■■□□□ 1.41
NUDCD3Q8IVD9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NUDCD3Q8IVD9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
NUDCD3Q8IVD9 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
NUDCD3Q8IVD9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NUDCD3Q8IVD9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
NUDCD3Q8IVD9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NUDCD3Q8IVD9 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NUDCD3Q8IVD9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
NUDCD3Q8IVD9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
NUDCD3Q8IVD9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NUDCD3Q8IVD9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NUDCD3Q8IVD9 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.77■■□□□ 1.4
NUDCD3Q8IVD9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NUDCD3Q8IVD9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.75■■□□□ 1.39
NUDCD3Q8IVD9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NUDCD3Q8IVD9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.75■■□□□ 1.39
NUDCD3Q8IVD9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NUDCD3Q8IVD9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NUDCD3Q8IVD9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NUDCD3Q8IVD9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NUDCD3Q8IVD9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NUDCD3Q8IVD9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.74■■□□□ 1.39
NUDCD3Q8IVD9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms