Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
COL28A1Q2UY09 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL28A1Q2UY09 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.25■■□□□ 1.31
COL28A1Q2UY09 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL28A1Q2UY09 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL28A1Q2UY09 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL28A1Q2UY09 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.24■■□□□ 1.31
COL28A1Q2UY09 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.24■■□□□ 1.31
COL28A1Q2UY09 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.24■■□□□ 1.31
COL28A1Q2UY09 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL28A1Q2UY09 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.23■■□□□ 1.31
COL28A1Q2UY09 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.23■■□□□ 1.31
COL28A1Q2UY09 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL28A1Q2UY09 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 KRT16P3-201ENST00000439127 1283 ntBASIC23.21■■□□□ 1.31
COL28A1Q2UY09 LONRF2P2-201ENST00000439212 571 ntBASIC23.21■■□□□ 1.31
COL28A1Q2UY09 KRT125P-201ENST00000546827 989 ntBASIC23.21■■□□□ 1.31
COL28A1Q2UY09 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL28A1Q2UY09 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL28A1Q2UY09 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.2■■□□□ 1.3
COL28A1Q2UY09 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL28A1Q2UY09 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL28A1Q2UY09 MIR3960-201ENST00000583311 91 ntBASIC23.2■■□□□ 1.3
COL28A1Q2UY09 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL28A1Q2UY09 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL28A1Q2UY09 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL28A1Q2UY09 UNC93B8-201ENST00000511903 705 ntBASIC23.19■■□□□ 1.3
COL28A1Q2UY09 MIR4787-201ENST00000607364 84 ntBASIC23.19■■□□□ 1.3
COL28A1Q2UY09 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
COL28A1Q2UY09 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL28A1Q2UY09 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL28A1Q2UY09 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 PFN2-211ENST00000489155 636 ntTSL 4 BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
COL28A1Q2UY09 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL28A1Q2UY09 AP002414.2-202ENST00000590929 1450 ntBASIC23.16■■□□□ 1.3
COL28A1Q2UY09 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.15■■□□□ 1.3
COL28A1Q2UY09 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
COL28A1Q2UY09 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
COL28A1Q2UY09 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.14■■□□□ 1.29
COL28A1Q2UY09 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL28A1Q2UY09 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL28A1Q2UY09 AC135731.1-201ENST00000569415 2548 ntBASIC23.14■■□□□ 1.29
COL28A1Q2UY09 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL28A1Q2UY09 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 AC005837.3-201ENST00000612163 286 ntBASIC23.13■■□□□ 1.29
COL28A1Q2UY09 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL28A1Q2UY09 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL28A1Q2UY09 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL28A1Q2UY09 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
COL28A1Q2UY09 AC019171.1-201ENST00000601251 1056 ntBASIC23.12■■□□□ 1.29
COL28A1Q2UY09 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL28A1Q2UY09 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL28A1Q2UY09 AC142086.6-201ENST00000621154 1765 ntBASIC23.12■■□□□ 1.29
COL28A1Q2UY09 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.11■■□□□ 1.29
COL28A1Q2UY09 BX664725.1-201ENST00000438252 379 ntBASIC23.11■■□□□ 1.29
COL28A1Q2UY09 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms