Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SOX3P41225 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
SOX3P41225 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
SOX3P41225 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.63■■□□□ 1.21
SOX3P41225 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22.63■■□□□ 1.21
SOX3P41225 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.63■■□□□ 1.21
SOX3P41225 RP9P-202ENST00000450133 1212 ntBASIC22.63■■□□□ 1.21
SOX3P41225 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX3P41225 MIR3960-201ENST00000583311 91 ntBASIC22.63■■□□□ 1.21
SOX3P41225 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX3P41225 AC009831.1-201ENST00000580420 1582 ntBASIC22.63■■□□□ 1.21
SOX3P41225 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX3P41225 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SOX3P41225 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
SOX3P41225 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.62■■□□□ 1.21
SOX3P41225 AC093536.1-201ENST00000569153 554 ntBASIC22.62■■□□□ 1.21
SOX3P41225 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.62■■□□□ 1.21
SOX3P41225 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.62■■□□□ 1.21
SOX3P41225 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.62■■□□□ 1.21
SOX3P41225 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SOX3P41225 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX3P41225 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX3P41225 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
SOX3P41225 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SOX3P41225 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
SOX3P41225 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.61■■□□□ 1.21
SOX3P41225 AC133552.2-201ENST00000619106 1032 ntBASIC22.61■■□□□ 1.21
SOX3P41225 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SOX3P41225 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX3P41225 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
SOX3P41225 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
SOX3P41225 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
SOX3P41225 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SOX3P41225 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SOX3P41225 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
SOX3P41225 KRT18P60-201ENST00000312876 1297 ntBASIC22.6■■□□□ 1.21
SOX3P41225 AC026202.3-201ENST00000600805 1127 ntBASIC22.6■■□□□ 1.21
SOX3P41225 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SOX3P41225 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SOX3P41225 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
SOX3P41225 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SOX3P41225 AC020928.2-201ENST00000588717 2197 ntBASIC22.59■■□□□ 1.21
SOX3P41225 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SOX3P41225 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
SOX3P41225 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
SOX3P41225 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.58■■□□□ 1.21
SOX3P41225 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SOX3P41225 AC012354.3-201ENST00000623734 483 ntBASIC22.58■■□□□ 1.21
SOX3P41225 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SOX3P41225 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.58■■□□□ 1.2
SOX3P41225 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
SOX3P41225 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SOX3P41225 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SOX3P41225 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.57■■□□□ 1.2
SOX3P41225 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.57■■□□□ 1.2
SOX3P41225 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SOX3P41225 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
SOX3P41225 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.56■■□□□ 1.2
SOX3P41225 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX3P41225 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.56■■□□□ 1.2
SOX3P41225 AL592293.1-201ENST00000502889 1188 ntBASIC22.56■■□□□ 1.2
SOX3P41225 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SOX3P41225 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SOX3P41225 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SOX3P41225 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SOX3P41225 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.55■■□□□ 1.2
SOX3P41225 RAP2CP1-202ENST00000605179 643 ntBASIC22.55■■□□□ 1.2
SOX3P41225 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SOX3P41225 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.55■■□□□ 1.2
SOX3P41225 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.54■■□□□ 1.2
SOX3P41225 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SOX3P41225 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX3P41225 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX3P41225 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.54■■□□□ 1.2
SOX3P41225 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
SOX3P41225 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SOX3P41225 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SOX3P41225 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.54■■□□□ 1.2
SOX3P41225 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
SOX3P41225 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
SOX3P41225 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.53■■□□□ 1.2
SOX3P41225 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX3P41225 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SOX3P41225 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
SOX3P41225 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX3P41225 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SOX3P41225 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SOX3P41225 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.52■■□□□ 1.2
SOX3P41225 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SOX3P41225 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
SOX3P41225 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.51■■□□□ 1.19
SOX3P41225 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.51■■□□□ 1.19
SOX3P41225 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SOX3P41225 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
SOX3P41225 AC145676.1-201ENST00000514988 2004 ntBASIC22.51■■□□□ 1.19
SOX3P41225 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
SOX3P41225 AC142472.1-201ENST00000612013 1741 ntBASIC22.51■■□□□ 1.19
SOX3P41225 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
SOX3P41225 AP004609.3-201ENST00000610705 1884 ntBASIC22.5■■□□□ 1.19
SOX3P41225 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms