Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
HADHAP40939 GPX1-201ENST00000419349 1106 ntBASIC24.41■■□□□ 1.5
HADHAP40939 ECEL1P2-201ENST00000461596 1295 ntBASIC24.41■■□□□ 1.5
HADHAP40939 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.41■■□□□ 1.5
HADHAP40939 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
HADHAP40939 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
HADHAP40939 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
HADHAP40939 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
HADHAP40939 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
HADHAP40939 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.4■■□□□ 1.5
HADHAP40939 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
HADHAP40939 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC24.4■■□□□ 1.5
HADHAP40939 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.4■■□□□ 1.5
HADHAP40939 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
HADHAP40939 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
HADHAP40939 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC24.39■■□□□ 1.49
HADHAP40939 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
HADHAP40939 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.38■■□□□ 1.49
HADHAP40939 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.38■■□□□ 1.49
HADHAP40939 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
HADHAP40939 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.38■■□□□ 1.49
HADHAP40939 AC025884.2-201ENST00000553429 711 ntBASIC24.38■■□□□ 1.49
HADHAP40939 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
HADHAP40939 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HADHAP40939 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
HADHAP40939 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
HADHAP40939 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.37■■□□□ 1.49
HADHAP40939 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
HADHAP40939 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.37■■□□□ 1.49
HADHAP40939 SMPD5-203ENST00000639008 1464 ntBASIC24.37■■□□□ 1.49
HADHAP40939 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HADHAP40939 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HADHAP40939 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HADHAP40939 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HADHAP40939 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.36■■□□□ 1.49
HADHAP40939 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HADHAP40939 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.36■■□□□ 1.49
HADHAP40939 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HADHAP40939 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
HADHAP40939 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HADHAP40939 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HADHAP40939 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.35■■□□□ 1.49
HADHAP40939 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HADHAP40939 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
HADHAP40939 AC135731.1-201ENST00000569415 2548 ntBASIC24.34■■□□□ 1.49
HADHAP40939 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC24.34■■□□□ 1.49
HADHAP40939 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.34■■□□□ 1.49
HADHAP40939 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HADHAP40939 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.34■■□□□ 1.49
HADHAP40939 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
HADHAP40939 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HADHAP40939 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HADHAP40939 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
HADHAP40939 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
HADHAP40939 MIR3960-201ENST00000583311 91 ntBASIC24.33■■□□□ 1.49
HADHAP40939 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
HADHAP40939 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.32■■□□□ 1.48
HADHAP40939 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.32■■□□□ 1.48
HADHAP40939 AC010501.1-201ENST00000606270 1962 ntBASIC24.32■■□□□ 1.48
HADHAP40939 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
HADHAP40939 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
HADHAP40939 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HADHAP40939 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.32■■□□□ 1.48
HADHAP40939 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
HADHAP40939 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
HADHAP40939 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.31■■□□□ 1.48
HADHAP40939 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.31■■□□□ 1.48
HADHAP40939 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
HADHAP40939 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
HADHAP40939 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.31■■□□□ 1.48
HADHAP40939 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HADHAP40939 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.3■■□□□ 1.48
HADHAP40939 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.3■■□□□ 1.48
HADHAP40939 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.3■■□□□ 1.48
HADHAP40939 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HADHAP40939 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HADHAP40939 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HADHAP40939 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HADHAP40939 HSD17B1P1-201ENST00000590052 955 ntBASIC24.28■■□□□ 1.48
HADHAP40939 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC24.28■■□□□ 1.48
HADHAP40939 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
HADHAP40939 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HADHAP40939 RNF126P1-201ENST00000567452 1320 ntBASIC24.28■■□□□ 1.48
HADHAP40939 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC24.28■■□□□ 1.48
HADHAP40939 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
HADHAP40939 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HADHAP40939 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
HADHAP40939 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HADHAP40939 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
HADHAP40939 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
HADHAP40939 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HADHAP40939 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HADHAP40939 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HADHAP40939 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HADHAP40939 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.26■■□□□ 1.47
HADHAP40939 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HADHAP40939 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HADHAP40939 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HADHAP40939 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HADHAP40939 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms