Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.03■□□□□ 0.81e-7■■■■□ 24.2
YBX3P16989 AGAP1-209ENST00000453371 2138 ntTSL 518.85■□□□□ 0.611e-7■■■■□ 24.2
YBX3P16989 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.151e-7■■■■□ 24.2
YBX3P16989 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC10.91□□□□□ -0.661e-7■■■■□ 24.2
YBX3P16989 AGAP1-207ENST00000428334 10090 ntTSL 5 BASIC10.14□□□□□ -0.791e-7■■■■□ 24.2
YBX3P16989 ENPP1-204ENST00000513998 3107 ntTSL 521■□□□□ 0.953e-6■■■■□ 24.1
YBX3P16989 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.443e-6■■■■□ 24.1
YBX3P16989 ATP5F1-203ENST00000464154 621 ntTSL 214.64□□□□□ -0.071e-15■■■■□ 24.1
YBX3P16989 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.284e-7■■■■□ 24.1
YBX3P16989 CTDSPL-207ENST00000447745 793 ntTSL 313.18□□□□□ -0.34e-7■■■■□ 24.1
YBX3P16989 CTDSPL-205ENST00000436654 804 ntTSL 312.13□□□□□ -0.474e-7■■■■□ 24.1
YBX3P16989 CTDSPL-201ENST00000273179 4459 ntAPPRIS P4 TSL 1 (best) BASIC8.64□□□□□ -1.034e-7■■■■□ 24.1
YBX3P16989 TNPO2-208ENST00000587654 575 ntTSL 422.03■■□□□ 1.122e-9■■■■□ 24.1
YBX3P16989 RNF41-209ENST00000551711 582 ntTSL 511.3□□□□□ -0.61e-9■■■■□ 24
YBX3P16989 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.023e-7■■■■□ 24
YBX3P16989 ANXA2-229ENST00000560165 718 ntTSL 321.56■■□□□ 1.048e-11■■■■□ 24
YBX3P16989 ANXA2-224ENST00000559725 561 ntTSL 415.21■□□□□ 0.038e-11■■■■□ 24
YBX3P16989 ANXA2-213ENST00000558558 513 ntTSL 310.83□□□□□ -0.688e-11■■■■□ 24
YBX3P16989 ANXA2-222ENST00000559559 1076 ntTSL 29.99□□□□□ -0.818e-11■■■■□ 24
YBX3P16989 ANXA2-207ENST00000557906 812 ntTSL 55.49□□□□□ -1.538e-11■■■■□ 24
YBX3P16989 ANXA2-217ENST00000559113 564 ntTSL 55.32□□□□□ -1.568e-11■■■■□ 24
YBX3P16989 SEPT9-219ENST00000588575 559 ntTSL 426.94■■□□□ 1.93e-7■■■■□ 24
YBX3P16989 SEPT9-227ENST00000590059 670 ntTSL 526.32■■□□□ 1.83e-7■■■■□ 24
YBX3P16989 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.58■□□□□ 0.563e-7■■■■□ 24
YBX3P16989 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.34■□□□□ 0.053e-7■■■■□ 24
YBX3P16989 TNPO2-211ENST00000588484 545 ntTSL 312.82□□□□□ -0.369e-7■■■■□ 24
YBX3P16989 DHRS3-203ENST00000482265 1036 ntTSL 319.38■□□□□ 0.696e-7■■■■□ 24
YBX3P16989 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC8.75□□□□□ -1.015e-9■■■■□ 24
YBX3P16989 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.013e-8■■■■□ 24
YBX3P16989 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.183e-8■■■■□ 24
YBX3P16989 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.183e-8■■■■□ 24
YBX3P16989 FAM122B-205ENST00000478384 743 ntTSL 311.83□□□□□ -0.523e-8■■■■□ 24
YBX3P16989 FAM122B-206ENST00000486347 1381 ntAPPRIS P3 TSL 2 BASIC11.53□□□□□ -0.563e-8■■■■□ 24
YBX3P16989 FAM122B-204ENST00000465128 733 ntTSL 39.08□□□□□ -0.963e-8■■■■□ 24
YBX3P16989 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.383e-8■■■■□ 24
YBX3P16989 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.413e-8■■■■□ 24
YBX3P16989 ATP11A-208ENST00000459908 4516 ntTSL 211.91□□□□□ -0.53e-8■■■■□ 24
YBX3P16989 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC10.45□□□□□ -0.743e-8■■■■□ 24
YBX3P16989 ATP11A-204ENST00000418678 3163 ntAPPRIS ALT2 TSL 1 (best)8.64□□□□□ -1.033e-8■■■■□ 24
YBX3P16989 FADS1-215ENST00000541683 1844 ntTSL 219.02■□□□□ 0.634e-19■■■■□ 24
YBX3P16989 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.331e-7■■■■□ 23.9
YBX3P16989 WWP2-218ENST00000569620 738 ntTSL 515.96■□□□□ 0.151e-7■■■■□ 23.9
YBX3P16989 WWP2-219ENST00000569658 583 ntTSL 214.82□□□□□ -0.041e-7■■■■□ 23.9
YBX3P16989 WWP2-206ENST00000563659 561 ntTSL 413.89□□□□□ -0.191e-7■■■■□ 23.9
YBX3P16989 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.8□□□□□ -0.21e-7■■■■□ 23.9
YBX3P16989 WWP2-202ENST00000359154 4515 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.351e-7■■■■□ 23.9
YBX3P16989 WWP2-204ENST00000561780 574 ntTSL 412.81□□□□□ -0.361e-7■■■■□ 23.9
YBX3P16989 WWP2-216ENST00000569174 2474 ntTSL 5 BASIC11.02□□□□□ -0.641e-7■■■■□ 23.9
YBX3P16989 RPS7P1-201ENST00000571702 585 ntBASIC9.28□□□□□ -0.921e-7■■■■□ 23.9
YBX3P16989 SPTBN1-204ENST00000467371 3332 ntTSL 27.87□□□□□ -1.156e-9■■■■□ 23.9
YBX3P16989 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.239e-7■■■■□ 23.9
YBX3P16989 GMPR-202ENST00000540478 793 ntTSL 214.72□□□□□ -0.059e-7■■■■□ 23.9
YBX3P16989 GMPR-203ENST00000543191 675 ntTSL 213.03□□□□□ -0.329e-7■■■■□ 23.9
YBX3P16989 GMPR-204ENST00000544145 750 ntTSL 39.74□□□□□ -0.859e-7■■■■□ 23.9
YBX3P16989 METTL26-204ENST00000397665 558 ntTSL 2 BASIC22.41■■□□□ 1.184e-9■■■■□ 23.9
YBX3P16989 ORC2-206ENST00000474877 551 ntTSL 46.12□□□□□ -1.439e-7■■■■□ 23.9
YBX3P16989 ADD1-215ENST00000510101 704 ntTSL 334.49■■■■□ 3.111e-7■■■■□ 23.9
YBX3P16989 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.21e-7■■■■□ 23.9
YBX3P16989 ADD1-213ENST00000508684 3059 ntTSL 221.38■■□□□ 1.011e-7■■■■□ 23.9
YBX3P16989 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.06■□□□□ 0.641e-7■■■■□ 23.9
YBX3P16989 LRRC20-202ENST00000357631 2906 ntTSL 218.3■□□□□ 0.521e-7■■■■□ 23.9
YBX3P16989 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.3■□□□□ 0.521e-7■■■■□ 23.9
YBX3P16989 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.94■□□□□ 0.461e-7■■■■□ 23.9
YBX3P16989 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.16■□□□□ 0.341e-7■■■■□ 23.9
YBX3P16989 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.161e-7■■■■□ 23.9
YBX3P16989 CDCP1-203ENST00000490471 563 ntTSL 415.21■□□□□ 0.031e-7■■■■□ 23.9
YBX3P16989 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-7■■■■□ 23.9
YBX3P16989 ADD1-212ENST00000508277 491 ntTSL 514.72□□□□□ -0.051e-7■■■■□ 23.9
YBX3P16989 ADD1-216ENST00000511797 671 ntTSL 513.61□□□□□ -0.231e-7■■■■□ 23.9
YBX3P16989 ADD1-214ENST00000509039 1569 ntTSL 212□□□□□ -0.491e-7■■■■□ 23.9
YBX3P16989 ADD1-209ENST00000503169 2394 ntTSL 29.34□□□□□ -0.911e-7■■■■□ 23.9
YBX3P16989 AC145207.5-201ENST00000582866 2682 ntBASIC9.12□□□□□ -0.951e-7■■■■□ 23.9
YBX3P16989 ANKRD28-204ENST00000451422 2485 ntTSL 28.03□□□□□ -1.121e-7■■■■□ 23.9
YBX3P16989 BLM-207ENST00000560136 2023 ntTSL 57.86□□□□□ -1.151e-7■■■■□ 23.9
YBX3P16989 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.211e-7■■■■□ 23.9
YBX3P16989 ADD1-220ENST00000534870 795 ntTSL 26.7□□□□□ -1.341e-7■■■■□ 23.9
YBX3P16989 BLM-206ENST00000559724 4510 ntTSL 1 (best)5.66□□□□□ -1.51e-7■■■■□ 23.9
YBX3P16989 ANKRD28-207ENST00000462657 581 ntTSL 35.6□□□□□ -1.511e-7■■■■□ 23.9
YBX3P16989 ANKRD28-213ENST00000498524 4289 ntTSL 24.64□□□□□ -1.671e-7■■■■□ 23.9
YBX3P16989 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.28□□□□□ -1.721e-7■■■■□ 23.9
YBX3P16989 RNY3P8-201ENST00000411366 126 ntBASIC1.28□□□□□ -2.21e-7■■■■□ 23.9
YBX3P16989 IDH3G-208ENST00000461215 757 ntTSL 520.97■□□□□ 0.957e-29■■■■□ 23.9
YBX3P16989 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.25■■□□□ 1.317e-9■■■■□ 23.9
YBX3P16989 EIF2B1-203ENST00000534960 618 ntTSL 519.03■□□□□ 0.647e-9■■■■□ 23.9
YBX3P16989 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.93■■□□□ 1.11e-11■■■■□ 23.9
YBX3P16989 BICD1-207ENST00000551848 1962 ntBASIC19.1■□□□□ 0.651e-11■■■■□ 23.9
YBX3P16989 BICD1-201ENST00000281474 3281 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.561e-11■■■■□ 23.9
YBX3P16989 BICD1-202ENST00000395758 3194 ntTSL 1 (best)9.1□□□□□ -0.951e-11■■■■□ 23.9
YBX3P16989 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.64□□□□□ -1.191e-11■■■■□ 23.9
YBX3P16989 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.411e-11■■■■□ 23.9
YBX3P16989 PIM1-203ENST00000479509 675 ntTSL 215.79■□□□□ 0.122e-63■■■■□ 23.9
YBX3P16989 PIM1-202ENST00000468243 818 ntTSL 1 (best)14.41□□□□□ -0.12e-63■■■■□ 23.9
YBX3P16989 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.411e-31■■■■□ 23.9
YBX3P16989 SERPINE1-201ENST00000223095 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.576e-22■■■■□ 23.8
YBX3P16989 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.875e-8■■■■□ 23.8
YBX3P16989 KCNK4-210ENST00000545838 532 ntTSL 226.39■■□□□ 1.825e-8■■■■□ 23.8
YBX3P16989 KCNK4-203ENST00000453423 971 ntTSL 226.07■■□□□ 1.765e-8■■■■□ 23.8
YBX3P16989 KCNK4-206ENST00000538846 814 ntTSL 1 (best)26.07■■□□□ 1.765e-8■■■■□ 23.8
YBX3P16989 KCNK4-208ENST00000539651 545 ntTSL 423.8■■□□□ 1.45e-8■■■■□ 23.8
YBX3P16989 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.26■■□□□ 1.315e-8■■■■□ 23.8
Retrieved 100 of 29,075 protein–RNA pairs in 738.6 ms