Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC26.43■■□□□ 1.82
TPM1P09493 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
TPM1P09493 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.42■■□□□ 1.82
TPM1P09493 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
TPM1P09493 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
TPM1P09493 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
TPM1P09493 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TPM1P09493 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.41■■□□□ 1.82
TPM1P09493 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
TPM1P09493 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TPM1P09493 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
TPM1P09493 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TPM1P09493 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
TPM1P09493 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
TPM1P09493 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.4■■□□□ 1.82
TPM1P09493 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
TPM1P09493 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
TPM1P09493 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
TPM1P09493 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
TPM1P09493 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
TPM1P09493 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
TPM1P09493 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.39■■□□□ 1.82
TPM1P09493 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.39■■□□□ 1.82
TPM1P09493 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.39■■□□□ 1.82
TPM1P09493 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.39■■□□□ 1.81
TPM1P09493 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC26.38■■□□□ 1.81
TPM1P09493 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.38■■□□□ 1.81
TPM1P09493 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
TPM1P09493 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TPM1P09493 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.38■■□□□ 1.81
TPM1P09493 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
TPM1P09493 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TPM1P09493 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TPM1P09493 AC022211.4-201ENST00000625094 2161 ntBASIC26.37■■□□□ 1.81
TPM1P09493 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TPM1P09493 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.37■■□□□ 1.81
TPM1P09493 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TPM1P09493 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TPM1P09493 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
TPM1P09493 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
TPM1P09493 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.36■■□□□ 1.81
TPM1P09493 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
TPM1P09493 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
TPM1P09493 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
TPM1P09493 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.35■■□□□ 1.81
TPM1P09493 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
TPM1P09493 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TPM1P09493 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
TPM1P09493 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TPM1P09493 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
TPM1P09493 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.33■■□□□ 1.81
TPM1P09493 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
TPM1P09493 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
TPM1P09493 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TPM1P09493 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.32■■□□□ 1.8
TPM1P09493 AC008813.1-201ENST00000536597 885 ntBASIC26.32■■□□□ 1.8
TPM1P09493 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.32■■□□□ 1.8
TPM1P09493 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
TPM1P09493 AC138932.3-201ENST00000567634 1902 ntBASIC26.31■■□□□ 1.8
TPM1P09493 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
TPM1P09493 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
TPM1P09493 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.31■■□□□ 1.8
TPM1P09493 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TPM1P09493 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.3■■□□□ 1.8
TPM1P09493 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TPM1P09493 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TPM1P09493 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TPM1P09493 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.29■■□□□ 1.8
TPM1P09493 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
TPM1P09493 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TPM1P09493 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
TPM1P09493 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
TPM1P09493 AC096887.2-201ENST00000623443 1957 ntBASIC26.29■■□□□ 1.8
TPM1P09493 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.28■■□□□ 1.8
TPM1P09493 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
TPM1P09493 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TPM1P09493 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
TPM1P09493 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.28■■□□□ 1.8
TPM1P09493 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TPM1P09493 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
TPM1P09493 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
TPM1P09493 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TPM1P09493 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TPM1P09493 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.27■■□□□ 1.8
TPM1P09493 LINC01971-201ENST00000617888 1048 ntBASIC26.27■■□□□ 1.8
TPM1P09493 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
TPM1P09493 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TPM1P09493 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TPM1P09493 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TPM1P09493 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TPM1P09493 AL139125.2-201ENST00000623134 1869 ntBASIC26.26■■□□□ 1.79
TPM1P09493 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.26■■□□□ 1.79
TPM1P09493 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TPM1P09493 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TPM1P09493 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TPM1P09493 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC26.25■■□□□ 1.79
TPM1P09493 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TPM1P09493 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
TPM1P09493 MIR219A2-201ENST00000608502 1504 ntBASIC26.25■■□□□ 1.79
TPM1P09493 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms