Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC097639.1-201ENST00000565519 1891 ntBASIC18.09■□□□□ 0.49
HLA-DQA1P01909 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DQA1P01909 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DQA1P01909 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DQA1P01909 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DQA1P01909 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DQA1P01909 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DQA1P01909 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DQA1P01909 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DQA1P01909 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DQA1P01909 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HLA-DQA1P01909 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HLA-DQA1P01909 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 LINC01124-201ENST00000409786 2117 ntBASIC18.03■□□□□ 0.48
HLA-DQA1P01909 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HLA-DQA1P01909 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DQA1P01909 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DQA1P01909 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HLA-DQA1P01909 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.02■□□□□ 0.48
HLA-DQA1P01909 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
HLA-DQA1P01909 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
HLA-DQA1P01909 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HLA-DQA1P01909 DUSP8P5-201ENST00000422884 1815 ntBASIC18.02■□□□□ 0.47
HLA-DQA1P01909 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HLA-DQA1P01909 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
HLA-DQA1P01909 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HLA-DQA1P01909 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18■□□□□ 0.47
HLA-DQA1P01909 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
HLA-DQA1P01909 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC18■□□□□ 0.47
HLA-DQA1P01909 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC18■□□□□ 0.47
HLA-DQA1P01909 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
HLA-DQA1P01909 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HLA-DQA1P01909 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 AC097358.2-201ENST00000607541 1159 ntBASIC17.99■□□□□ 0.47
HLA-DQA1P01909 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HLA-DQA1P01909 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HLA-DQA1P01909 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms