Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 AL136116.3-201ENST00000402907 1138 ntBASIC28.26■■■□□ 2.11
ALDH1A1P00352 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
ALDH1A1P00352 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
ALDH1A1P00352 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
ALDH1A1P00352 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC28.25■■■□□ 2.11
ALDH1A1P00352 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
ALDH1A1P00352 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
ALDH1A1P00352 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
ALDH1A1P00352 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.24■■■□□ 2.11
ALDH1A1P00352 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
ALDH1A1P00352 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
ALDH1A1P00352 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC28.23■■■□□ 2.11
ALDH1A1P00352 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC28.23■■■□□ 2.11
ALDH1A1P00352 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC28.23■■■□□ 2.11
ALDH1A1P00352 AC005837.3-201ENST00000612163 286 ntBASIC28.23■■■□□ 2.11
ALDH1A1P00352 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.22■■■□□ 2.11
ALDH1A1P00352 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
ALDH1A1P00352 WHAMMP3-201ENST00000611636 1609 ntBASIC28.22■■■□□ 2.11
ALDH1A1P00352 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.22■■■□□ 2.11
ALDH1A1P00352 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
ALDH1A1P00352 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC28.22■■■□□ 2.11
ALDH1A1P00352 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
ALDH1A1P00352 AC092028.1-203ENST00000608262 953 ntBASIC28.22■■■□□ 2.11
ALDH1A1P00352 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
ALDH1A1P00352 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
ALDH1A1P00352 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC28.21■■■□□ 2.11
ALDH1A1P00352 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC28.21■■■□□ 2.11
ALDH1A1P00352 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
ALDH1A1P00352 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
ALDH1A1P00352 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.21■■■□□ 2.11
ALDH1A1P00352 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC28.2■■■□□ 2.1
ALDH1A1P00352 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC28.2■■■□□ 2.1
ALDH1A1P00352 AC110285.6-201ENST00000617652 491 ntBASIC28.2■■■□□ 2.1
ALDH1A1P00352 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
ALDH1A1P00352 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
ALDH1A1P00352 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
ALDH1A1P00352 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
ALDH1A1P00352 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC28.2■■■□□ 2.1
ALDH1A1P00352 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.2■■■□□ 2.1
ALDH1A1P00352 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
ALDH1A1P00352 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
ALDH1A1P00352 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC28.18■■■□□ 2.1
ALDH1A1P00352 ABCB10P3-201ENST00000561950 2166 ntBASIC28.17■■■□□ 2.1
ALDH1A1P00352 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
ALDH1A1P00352 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC28.17■■■□□ 2.1
ALDH1A1P00352 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC28.17■■■□□ 2.1
ALDH1A1P00352 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC28.17■■■□□ 2.1
ALDH1A1P00352 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC28.17■■■□□ 2.1
ALDH1A1P00352 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
ALDH1A1P00352 AC133561.4-201ENST00000566112 224 ntBASIC28.16■■■□□ 2.1
ALDH1A1P00352 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
ALDH1A1P00352 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ALDH1A1P00352 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
ALDH1A1P00352 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC28.15■■■□□ 2.1
ALDH1A1P00352 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
ALDH1A1P00352 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
ALDH1A1P00352 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.15■■■□□ 2.1
ALDH1A1P00352 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.14■■■□□ 2.1
ALDH1A1P00352 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.14■■■□□ 2.1
ALDH1A1P00352 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ALDH1A1P00352 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
ALDH1A1P00352 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.1
ALDH1A1P00352 AL117332.1-201ENST00000622628 974 ntBASIC28.14■■■□□ 2.1
ALDH1A1P00352 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
ALDH1A1P00352 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
ALDH1A1P00352 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
ALDH1A1P00352 AC120024.1-201ENST00000562672 995 ntBASIC28.13■■■□□ 2.09
ALDH1A1P00352 MIR3621-201ENST00000580529 85 ntBASIC28.13■■■□□ 2.09
ALDH1A1P00352 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC28.13■■■□□ 2.09
ALDH1A1P00352 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.13■■■□□ 2.09
ALDH1A1P00352 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
ALDH1A1P00352 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
ALDH1A1P00352 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
ALDH1A1P00352 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC28.12■■■□□ 2.09
ALDH1A1P00352 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
ALDH1A1P00352 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
ALDH1A1P00352 AC096631.2-201ENST00000436136 790 ntBASIC28.11■■■□□ 2.09
ALDH1A1P00352 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC28.11■■■□□ 2.09
ALDH1A1P00352 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
ALDH1A1P00352 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC28.1■■■□□ 2.09
ALDH1A1P00352 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC28.1■■■□□ 2.09
ALDH1A1P00352 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
ALDH1A1P00352 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
ALDH1A1P00352 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC28.08■■■□□ 2.09
ALDH1A1P00352 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC28.08■■■□□ 2.09
ALDH1A1P00352 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.08■■■□□ 2.09
ALDH1A1P00352 AC010997.5-201ENST00000609182 354 ntBASIC28.08■■■□□ 2.09
ALDH1A1P00352 AC092666.2-201ENST00000613287 246 ntBASIC28.08■■■□□ 2.09
ALDH1A1P00352 MIR6724-1-201ENST00000616420 92 ntBASIC28.08■■■□□ 2.09
ALDH1A1P00352 MIR6724-2-201ENST00000616483 92 ntBASIC28.08■■■□□ 2.09
ALDH1A1P00352 MIR6724-4-201ENST00000617390 92 ntBASIC28.08■■■□□ 2.09
ALDH1A1P00352 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
ALDH1A1P00352 MIR6724-3-201ENST00000622482 92 ntBASIC28.08■■■□□ 2.09
ALDH1A1P00352 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
ALDH1A1P00352 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
ALDH1A1P00352 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
ALDH1A1P00352 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.07■■■□□ 2.08
ALDH1A1P00352 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
ALDH1A1P00352 AL356740.2-201ENST00000601559 647 ntBASIC28.07■■■□□ 2.08
ALDH1A1P00352 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms