Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 UPK3BP1-201ENST00000428678 509 ntBASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 KRT16P4-201ENST00000453883 522 ntBASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 AC138894.3-201ENST00000603787 634 ntBASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 AL591684.3-201ENST00000605187 298 ntBASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.52■□□□□ 0.4
LRRC40Q9H9A6 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRRC40Q9H9A6 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SIGLEC16-201ENST00000599858 1437 ntBASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRRC40Q9H9A6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AC148477.5-201ENST00000625164 1645 ntBASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AC073592.4-201ENST00000623827 446 ntBASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 GPR89P-201ENST00000407924 1495 ntBASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRRC40Q9H9A6 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms