Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
ERCC4Q92889 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.59■□□□□ 0.73
ERCC4Q92889 AC005336.2-201ENST00000593183 939 ntBASIC19.59■□□□□ 0.73
ERCC4Q92889 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
ERCC4Q92889 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
ERCC4Q92889 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ERCC4Q92889 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.59■□□□□ 0.73
ERCC4Q92889 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.73
ERCC4Q92889 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
ERCC4Q92889 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
ERCC4Q92889 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 AC097374.2-201ENST00000618617 1306 ntBASIC19.58■□□□□ 0.73
ERCC4Q92889 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.58■□□□□ 0.73
ERCC4Q92889 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
ERCC4Q92889 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.58■□□□□ 0.72
ERCC4Q92889 AC002558.1-201ENST00000488906 803 ntBASIC19.58■□□□□ 0.72
ERCC4Q92889 AC063952.2-201ENST00000498792 1227 ntBASIC19.58■□□□□ 0.72
ERCC4Q92889 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.58■□□□□ 0.72
ERCC4Q92889 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.58■□□□□ 0.72
ERCC4Q92889 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
ERCC4Q92889 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.58■□□□□ 0.72
ERCC4Q92889 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
ERCC4Q92889 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ERCC4Q92889 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
ERCC4Q92889 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
ERCC4Q92889 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.58■□□□□ 0.72
ERCC4Q92889 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ERCC4Q92889 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ERCC4Q92889 LINC02199-201ENST00000506655 2702 ntBASIC19.58■□□□□ 0.72
ERCC4Q92889 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
ERCC4Q92889 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
ERCC4Q92889 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.57■□□□□ 0.72
ERCC4Q92889 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.57■□□□□ 0.72
ERCC4Q92889 AC124864.1-201ENST00000623408 392 ntBASIC19.57■□□□□ 0.72
ERCC4Q92889 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.57■□□□□ 0.72
ERCC4Q92889 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.57■□□□□ 0.72
ERCC4Q92889 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
ERCC4Q92889 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.57■□□□□ 0.72
ERCC4Q92889 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ERCC4Q92889 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ERCC4Q92889 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
ERCC4Q92889 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.56■□□□□ 0.72
ERCC4Q92889 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
ERCC4Q92889 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 AL645929.1-201ENST00000420084 975 ntBASIC19.56■□□□□ 0.72
ERCC4Q92889 RN7SL606P-201ENST00000472779 293 ntBASIC19.56■□□□□ 0.72
ERCC4Q92889 AC091607.1-201ENST00000490318 1060 ntBASIC19.56■□□□□ 0.72
ERCC4Q92889 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.56■□□□□ 0.72
ERCC4Q92889 RN7SL850P-201ENST00000579959 291 ntBASIC19.56■□□□□ 0.72
ERCC4Q92889 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.56■□□□□ 0.72
ERCC4Q92889 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.56■□□□□ 0.72
ERCC4Q92889 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ERCC4Q92889 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms