Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
RTF1Q92541 AC025580.3-201ENST00000617932 1424 ntBASIC22.42■■□□□ 1.18
RTF1Q92541 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 NOC2LP2-201ENST00000407594 1944 ntBASIC22.42■■□□□ 1.18
RTF1Q92541 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
RTF1Q92541 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC22.42■■□□□ 1.18
RTF1Q92541 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC22.42■■□□□ 1.18
RTF1Q92541 SMN2-210ENST00000511812 867 ntTSL 2 BASIC22.42■■□□□ 1.18
RTF1Q92541 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC22.42■■□□□ 1.18
RTF1Q92541 PDPK2P-202ENST00000562415 1191 ntBASIC22.42■■□□□ 1.18
RTF1Q92541 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC22.42■■□□□ 1.18
RTF1Q92541 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC22.42■■□□□ 1.18
RTF1Q92541 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
RTF1Q92541 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 HNRNPRP1-201ENST00000453465 1695 ntBASIC22.42■■□□□ 1.18
RTF1Q92541 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC22.42■■□□□ 1.18
RTF1Q92541 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 AL138688.1-201ENST00000624851 1594 ntBASIC22.42■■□□□ 1.18
RTF1Q92541 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RTF1Q92541 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
RTF1Q92541 AC129492.6-201ENST00000611383 1305 ntBASIC22.41■■□□□ 1.18
RTF1Q92541 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.41■■□□□ 1.18
RTF1Q92541 FAM185BP-201ENST00000443595 716 ntBASIC22.41■■□□□ 1.18
RTF1Q92541 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC22.41■■□□□ 1.18
RTF1Q92541 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC22.41■■□□□ 1.18
RTF1Q92541 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC22.41■■□□□ 1.18
RTF1Q92541 TPR-209ENST00000613151 2478 ntTSL 5 BASIC22.41■■□□□ 1.18
RTF1Q92541 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
RTF1Q92541 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC22.41■■□□□ 1.18
RTF1Q92541 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC22.41■■□□□ 1.18
RTF1Q92541 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RTF1Q92541 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC22.41■■□□□ 1.18
RTF1Q92541 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
RTF1Q92541 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC22.4■■□□□ 1.18
RTF1Q92541 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
RTF1Q92541 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC22.4■■□□□ 1.18
RTF1Q92541 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC22.4■■□□□ 1.18
RTF1Q92541 AC005829.1-201ENST00000570002 483 ntBASIC22.4■■□□□ 1.18
RTF1Q92541 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
RTF1Q92541 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC22.4■■□□□ 1.18
RTF1Q92541 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC22.4■■□□□ 1.18
RTF1Q92541 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RTF1Q92541 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.18
RTF1Q92541 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.18
RTF1Q92541 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC22.39■■□□□ 1.18
RTF1Q92541 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RTF1Q92541 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC22.39■■□□□ 1.17
RTF1Q92541 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RTF1Q92541 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
RTF1Q92541 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.39■■□□□ 1.17
RTF1Q92541 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC22.39■■□□□ 1.17
RTF1Q92541 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.39■■□□□ 1.17
RTF1Q92541 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC22.39■■□□□ 1.17
RTF1Q92541 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC22.39■■□□□ 1.17
RTF1Q92541 C20orf181-201ENST00000623918 480 ntBASIC22.39■■□□□ 1.17
RTF1Q92541 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC22.39■■□□□ 1.17
RTF1Q92541 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC22.39■■□□□ 1.17
RTF1Q92541 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC22.39■■□□□ 1.17
RTF1Q92541 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC22.39■■□□□ 1.17
RTF1Q92541 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
RTF1Q92541 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RTF1Q92541 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
RTF1Q92541 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
RTF1Q92541 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.17
RTF1Q92541 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC22.38■■□□□ 1.17
RTF1Q92541 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RTF1Q92541 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms