Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
LMX1AQ8TE12 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 AP000344.2-201ENST00000512987 629 ntBASIC16.73■□□□□ 0.27
LMX1AQ8TE12 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LMX1AQ8TE12 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 AC112191.1-201ENST00000523689 701 ntBASIC16.72■□□□□ 0.27
LMX1AQ8TE12 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 AC027612.4-201ENST00000605371 583 ntBASIC16.72■□□□□ 0.27
LMX1AQ8TE12 REXO1L3P-201ENST00000622202 1288 ntBASIC16.72■□□□□ 0.27
LMX1AQ8TE12 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LMX1AQ8TE12 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LMX1AQ8TE12 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms