Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 AC097493.3-201ENST00000509725 367 ntBASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 AL158211.3-201ENST00000607385 239 ntBASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SLC44A3Q8N4M1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 WIZP1-201ENST00000531444 2299 ntBASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 AP005018.1-201ENST00000525475 301 ntBASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SLC44A3Q8N4M1 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 AL009183.1-201ENST00000603760 355 ntBASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 REXO1L11P-201ENST00000620964 1927 ntBASIC17.53■□□□□ 0.4
SLC44A3Q8N4M1 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC44A3Q8N4M1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms