Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.11■□□□□ 0.17
DEPDC4Q8N2C3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 KRT18P38-201ENST00000449496 1282 ntBASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 FAM86EP-206ENST00000510506 987 ntBASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 AL136038.3-201ENST00000561909 1096 ntBASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 AL136379.1-201ENST00000623471 2642 ntBASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
DEPDC4Q8N2C3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 AC116353.5-201ENST00000638148 1699 ntBASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
DEPDC4Q8N2C3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms