Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 NKAPP1-205ENST00000585790 367 ntBASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 AC008608.2-201ENST00000606089 416 ntBASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 AL022326.1-202ENST00000641533 845 ntBASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 PRORSD1P-202ENST00000563365 2154 ntBASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC65Q8IXS2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC65Q8IXS2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC65Q8IXS2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC65Q8IXS2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
CCDC65Q8IXS2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.14■□□□□ 0.66
CCDC65Q8IXS2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 GPR89P-201ENST00000407924 1495 ntBASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCDC65Q8IXS2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AC060834.1-201ENST00000443027 2032 ntBASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 LINC00982-205ENST00000420957 435 ntBASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SAPCD2P3-201ENST00000455031 850 ntBASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 FGFR3P6-201ENST00000457012 610 ntBASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AC124947.2-201ENST00000547118 1133 ntBASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC65Q8IXS2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC65Q8IXS2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms