Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 TSPY26P-201ENST00000476365 1326 ntBASIC10.73□□□□□ -0.69
LINC00643Q86TS7 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC10.73□□□□□ -0.69
LINC00643Q86TS7 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 UCKL1-AS1-201ENST00000623569 3602 ntBASIC10.72□□□□□ -0.69
LINC00643Q86TS7 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 RBM17P2-201ENST00000616397 1405 ntBASIC10.72□□□□□ -0.69
LINC00643Q86TS7 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
LINC00643Q86TS7 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms