Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.49■□□□□ 0.71
CCNA1P78396 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 MIR943-201ENST00000401286 94 ntBASIC19.49■□□□□ 0.71
CCNA1P78396 AC107890.1-201ENST00000422478 521 ntBASIC19.49■□□□□ 0.71
CCNA1P78396 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC19.49■□□□□ 0.71
CCNA1P78396 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCNA1P78396 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
CCNA1P78396 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCNA1P78396 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CCNA1P78396 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 LYSMD4-203ENST00000378904 2122 ntBASIC19.48■□□□□ 0.71
CCNA1P78396 LINC00304-203ENST00000565008 1864 ntBASIC19.48■□□□□ 0.71
CCNA1P78396 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 UXT-AS1-201ENST00000590504 1525 ntBASIC19.48■□□□□ 0.71
CCNA1P78396 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 SPDYE7P-202ENST00000420373 878 ntBASIC19.48■□□□□ 0.71
CCNA1P78396 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.48■□□□□ 0.71
CCNA1P78396 AC125807.1-201ENST00000483097 614 ntBASIC19.48■□□□□ 0.71
CCNA1P78396 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 AC109635.5-201ENST00000533593 962 ntBASIC19.48■□□□□ 0.71
CCNA1P78396 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.48■□□□□ 0.71
CCNA1P78396 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.48■□□□□ 0.71
CCNA1P78396 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.48■□□□□ 0.71
CCNA1P78396 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
CCNA1P78396 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCNA1P78396 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCNA1P78396 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCNA1P78396 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
CCNA1P78396 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.47■□□□□ 0.71
CCNA1P78396 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.47■□□□□ 0.71
CCNA1P78396 GPS2P2-201ENST00000430745 888 ntBASIC19.47■□□□□ 0.71
CCNA1P78396 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.47■□□□□ 0.71
CCNA1P78396 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.47■□□□□ 0.71
CCNA1P78396 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.47■□□□□ 0.71
CCNA1P78396 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 AL353732.1-201ENST00000569618 1459 ntBASIC19.47■□□□□ 0.71
CCNA1P78396 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCNA1P78396 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCNA1P78396 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.47■□□□□ 0.71
CCNA1P78396 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCNA1P78396 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms