Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
CLRN1P58418 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CLRN1P58418 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CLRN1P58418 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 AC080080.1-201ENST00000625121 2420 ntBASIC15.43■□□□□ 0.06
CLRN1P58418 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN1P58418 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CLRN1P58418 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.43■□□□□ 0.06
CLRN1P58418 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.43■□□□□ 0.06
CLRN1P58418 KRT16P4-201ENST00000453883 522 ntBASIC15.43■□□□□ 0.06
CLRN1P58418 FOSL1P1-201ENST00000511041 816 ntBASIC15.43■□□□□ 0.06
CLRN1P58418 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN1P58418 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.43■□□□□ 0.06
CLRN1P58418 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.43■□□□□ 0.06
CLRN1P58418 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN1P58418 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.43■□□□□ 0.06
CLRN1P58418 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 FLJ16779-201ENST00000612722 7638 ntBASIC15.43■□□□□ 0.06
CLRN1P58418 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN1P58418 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC15.43■□□□□ 0.06
CLRN1P58418 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLRN1P58418 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CLRN1P58418 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLRN1P58418 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.42■□□□□ 0.06
CLRN1P58418 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.42■□□□□ 0.06
CLRN1P58418 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 PKD1P5-201ENST00000532415 10291 ntBASIC15.42■□□□□ 0.06
CLRN1P58418 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.42■□□□□ 0.06
CLRN1P58418 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 AL135999.2-201ENST00000622438 1686 ntBASIC15.42■□□□□ 0.06
CLRN1P58418 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 PMPCAP1-201ENST00000508114 1576 ntBASIC15.42■□□□□ 0.06
CLRN1P58418 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
CLRN1P58418 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CLRN1P58418 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.42■□□□□ 0.06
CLRN1P58418 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CLRN1P58418 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.42■□□□□ 0.06
CLRN1P58418 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.42■□□□□ 0.06
CLRN1P58418 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
CLRN1P58418 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.42■□□□□ 0.06
CLRN1P58418 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLRN1P58418 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CLRN1P58418 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.41■□□□□ 0.06
CLRN1P58418 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.41■□□□□ 0.06
CLRN1P58418 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.41■□□□□ 0.06
CLRN1P58418 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CLRN1P58418 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLRN1P58418 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms