Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 SLC25A1P3-201ENST00000395415 828 ntBASIC16.95■□□□□ 0.3
PKNOX1P55347 TSPY22P-201ENST00000427496 604 ntBASIC16.95■□□□□ 0.3
PKNOX1P55347 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
PKNOX1P55347 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.95■□□□□ 0.3
PKNOX1P55347 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.95■□□□□ 0.3
PKNOX1P55347 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 AC093525.9-201ENST00000624961 1746 ntBASIC16.95■□□□□ 0.3
PKNOX1P55347 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PKNOX1P55347 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.95■□□□□ 0.3
PKNOX1P55347 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 AC011270.2-201ENST00000624293 2550 ntBASIC16.94■□□□□ 0.3
PKNOX1P55347 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PKNOX1P55347 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 AC103564.2-201ENST00000432853 1299 ntBASIC16.94■□□□□ 0.3
PKNOX1P55347 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PKNOX1P55347 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.94■□□□□ 0.3
PKNOX1P55347 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
PKNOX1P55347 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 AC090616.6-201ENST00000582640 721 ntBASIC16.94■□□□□ 0.3
PKNOX1P55347 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.94■□□□□ 0.3
PKNOX1P55347 AL592071.1-201ENST00000611956 408 ntBASIC16.94■□□□□ 0.3
PKNOX1P55347 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.94■□□□□ 0.3
PKNOX1P55347 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.94■□□□□ 0.3
PKNOX1P55347 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PKNOX1P55347 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
PKNOX1P55347 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PKNOX1P55347 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PKNOX1P55347 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.94■□□□□ 0.3
PKNOX1P55347 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.93■□□□□ 0.3
PKNOX1P55347 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.93■□□□□ 0.3
PKNOX1P55347 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PKNOX1P55347 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
PKNOX1P55347 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.93■□□□□ 0.3
PKNOX1P55347 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
PKNOX1P55347 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PKNOX1P55347 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.93■□□□□ 0.3
PKNOX1P55347 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PKNOX1P55347 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PKNOX1P55347 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms