Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGCS2P54868 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.77■□□□□ 0.76
HMGCS2P54868 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGCS2P54868 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
HMGCS2P54868 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
HMGCS2P54868 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGCS2P54868 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGCS2P54868 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HMGCS2P54868 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HMGCS2P54868 RBPMS2P1-201ENST00000437762 623 ntBASIC19.76■□□□□ 0.75
HMGCS2P54868 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 RNA5SP421-201ENST00000516864 134 ntBASIC19.76■□□□□ 0.75
HMGCS2P54868 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 AL512356.2-201ENST00000546955 174 ntBASIC19.76■□□□□ 0.75
HMGCS2P54868 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 AL009183.1-201ENST00000603760 355 ntBASIC19.76■□□□□ 0.75
HMGCS2P54868 AJ011932.1-201ENST00000621707 465 ntBASIC19.76■□□□□ 0.75
HMGCS2P54868 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.76■□□□□ 0.75
HMGCS2P54868 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.76■□□□□ 0.75
HMGCS2P54868 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGCS2P54868 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGCS2P54868 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGCS2P54868 TUBB3P1-201ENST00000405796 1332 ntBASIC19.76■□□□□ 0.75
HMGCS2P54868 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
HMGCS2P54868 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
HMGCS2P54868 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
HMGCS2P54868 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGCS2P54868 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.75■□□□□ 0.75
HMGCS2P54868 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.75■□□□□ 0.75
HMGCS2P54868 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.75■□□□□ 0.75
HMGCS2P54868 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGCS2P54868 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGCS2P54868 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGCS2P54868 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.75■□□□□ 0.75
HMGCS2P54868 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGCS2P54868 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGCS2P54868 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGCS2P54868 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HMGCS2P54868 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGCS2P54868 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 MIR943-201ENST00000401286 94 ntBASIC19.74■□□□□ 0.75
HMGCS2P54868 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 PMS2P4-201ENST00000412466 1052 ntBASIC19.74■□□□□ 0.75
HMGCS2P54868 AC055876.3-201ENST00000431496 288 ntBASIC19.74■□□□□ 0.75
HMGCS2P54868 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGCS2P54868 IGHV3-62-201ENST00000520057 340 ntBASIC19.74■□□□□ 0.75
HMGCS2P54868 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
HMGCS2P54868 LINC01225-203ENST00000563550 1244 ntBASIC19.74■□□□□ 0.75
HMGCS2P54868 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 AC138649.4-201ENST00000612222 287 ntBASIC19.74■□□□□ 0.75
HMGCS2P54868 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGCS2P54868 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.74■□□□□ 0.75
HMGCS2P54868 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGCS2P54868 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms