Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 MIR4492-201ENST00000581627 80 ntBASIC21.22■□□□□ 0.99
NUP98P52948 AC138649.4-201ENST00000612222 287 ntBASIC21.22■□□□□ 0.99
NUP98P52948 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 TUBB3P1-201ENST00000405796 1332 ntBASIC21.22■□□□□ 0.99
NUP98P52948 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.22■□□□□ 0.99
NUP98P52948 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.22■□□□□ 0.99
NUP98P52948 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.22■□□□□ 0.99
NUP98P52948 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 SLC25A39P2-201ENST00000537614 270 ntBASIC21.22■□□□□ 0.99
NUP98P52948 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.22■□□□□ 0.99
NUP98P52948 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.22■□□□□ 0.99
NUP98P52948 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.22■□□□□ 0.99
NUP98P52948 AC008267.7-201ENST00000624570 1194 ntBASIC21.22■□□□□ 0.99
NUP98P52948 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
NUP98P52948 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NUP98P52948 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
NUP98P52948 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.21■□□□□ 0.99
NUP98P52948 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.21■□□□□ 0.99
NUP98P52948 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.21■□□□□ 0.99
NUP98P52948 AC016027.1-202ENST00000607927 1699 ntBASIC21.21■□□□□ 0.99
NUP98P52948 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.21■□□□□ 0.99
NUP98P52948 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.21■□□□□ 0.99
NUP98P52948 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.21■□□□□ 0.99
NUP98P52948 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.21■□□□□ 0.99
NUP98P52948 KRT8P23-201ENST00000560090 1207 ntBASIC21.21■□□□□ 0.99
NUP98P52948 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 CYP2A7P1-201ENST00000595391 815 ntBASIC21.21■□□□□ 0.99
NUP98P52948 AL390754.1-201ENST00000619088 582 ntBASIC21.21■□□□□ 0.99
NUP98P52948 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
NUP98P52948 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.21■□□□□ 0.99
NUP98P52948 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.21■□□□□ 0.99
NUP98P52948 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUP98P52948 AC134043.2-201ENST00000624206 2238 ntBASIC21.21■□□□□ 0.99
NUP98P52948 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.21■□□□□ 0.99
NUP98P52948 MRPS18AP1-201ENST00000414458 589 ntBASIC21.2■□□□□ 0.98
NUP98P52948 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC21.2■□□□□ 0.98
NUP98P52948 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.2■□□□□ 0.98
NUP98P52948 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.2■□□□□ 0.98
NUP98P52948 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NUP98P52948 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NUP98P52948 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 NEFHP1-201ENST00000412845 2629 ntBASIC21.2■□□□□ 0.98
NUP98P52948 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.2■□□□□ 0.98
NUP98P52948 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUP98P52948 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms